Hb_156973_010

Information

Type -
Description -
Location Contig156973: 1098-5813
Sequence    

Annotation

kegg
ID rcu:RCOM_0724570
description hypothetical protein
nr
ID XP_002524889.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFX0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0724570 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein s24 mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13667: 912-5815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156973_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_023386_020 0.0555614524 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
3 Hb_002175_030 0.0581205892 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
4 Hb_003125_160 0.0605446525 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
5 Hb_001258_090 0.0641028184 - - PREDICTED: protein spt2-like [Jatropha curcas]
6 Hb_000853_230 0.0641237374 - - syntaxin, putative [Ricinus communis]
7 Hb_000403_050 0.0645043691 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
8 Hb_007075_040 0.0647303811 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
9 Hb_000879_200 0.0672327672 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
10 Hb_007632_030 0.0674107899 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
11 Hb_006620_020 0.068330901 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
12 Hb_003878_070 0.0690814089 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
13 Hb_003665_060 0.0697603851 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
14 Hb_000093_160 0.0700718425 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
15 Hb_000345_170 0.070616161 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
16 Hb_000334_280 0.0715569006 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
17 Hb_000230_560 0.0719856467 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
18 Hb_023386_040 0.0720953192 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
19 Hb_001390_110 0.072638415 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
20 Hb_000365_120 0.073185267 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_156973_010 Hb_156973_010 Hb_023386_020 Hb_023386_020 Hb_156973_010--Hb_023386_020 Hb_002175_030 Hb_002175_030 Hb_156973_010--Hb_002175_030 Hb_003125_160 Hb_003125_160 Hb_156973_010--Hb_003125_160 Hb_001258_090 Hb_001258_090 Hb_156973_010--Hb_001258_090 Hb_000853_230 Hb_000853_230 Hb_156973_010--Hb_000853_230 Hb_000403_050 Hb_000403_050 Hb_156973_010--Hb_000403_050 Hb_004100_080 Hb_004100_080 Hb_023386_020--Hb_004100_080 Hb_000926_190 Hb_000926_190 Hb_023386_020--Hb_000926_190 Hb_002518_280 Hb_002518_280 Hb_023386_020--Hb_002518_280 Hb_033720_010 Hb_033720_010 Hb_023386_020--Hb_033720_010 Hb_000879_200 Hb_000879_200 Hb_023386_020--Hb_000879_200 Hb_001433_070 Hb_001433_070 Hb_002175_030--Hb_001433_070 Hb_002175_030--Hb_000853_230 Hb_001089_110 Hb_001089_110 Hb_002175_030--Hb_001089_110 Hb_010068_040 Hb_010068_040 Hb_002175_030--Hb_010068_040 Hb_006620_020 Hb_006620_020 Hb_002175_030--Hb_006620_020 Hb_000230_560 Hb_000230_560 Hb_003125_160--Hb_000230_560 Hb_003665_060 Hb_003665_060 Hb_003125_160--Hb_003665_060 Hb_004182_040 Hb_004182_040 Hb_003125_160--Hb_004182_040 Hb_002918_030 Hb_002918_030 Hb_003125_160--Hb_002918_030 Hb_001369_180 Hb_001369_180 Hb_003125_160--Hb_001369_180 Hb_003010_030 Hb_003010_030 Hb_001258_090--Hb_003010_030 Hb_001595_030 Hb_001595_030 Hb_001258_090--Hb_001595_030 Hb_000093_160 Hb_000093_160 Hb_001258_090--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_001258_090--Hb_000038_170 Hb_001258_090--Hb_023386_020 Hb_007054_060 Hb_007054_060 Hb_001258_090--Hb_007054_060 Hb_000853_230--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_000853_230--Hb_004055_150 Hb_000853_230--Hb_000879_200 Hb_000390_180 Hb_000390_180 Hb_000853_230--Hb_000390_180 Hb_000853_230--Hb_033720_010 Hb_001926_030 Hb_001926_030 Hb_000853_230--Hb_001926_030 Hb_003125_120 Hb_003125_120 Hb_000403_050--Hb_003125_120 Hb_036790_100 Hb_036790_100 Hb_000403_050--Hb_036790_100 Hb_000334_280 Hb_000334_280 Hb_000403_050--Hb_000334_280 Hb_001163_050 Hb_001163_050 Hb_000403_050--Hb_001163_050 Hb_005271_220 Hb_005271_220 Hb_000403_050--Hb_005271_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.014 25.83 28.2063 25.2159 42.7407 49.6516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.2924 46.3779 27.549 30.1584 29.5344

CAGE analysis