Hb_157022_010

Information

Type -
Description -
Location Contig157022: 11238-14943
Sequence    

Annotation

kegg
ID rcu:RCOM_0521730
description hypothetical protein
nr
ID XP_012070994.1
description PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L456
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01022 PE=4 SV=1
Gene Ontology
ID GO:0044763
description intracellular protein transport protein uso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13695: 10865-11685 , PASA_asmbl_13696: 12360-12970 , PASA_asmbl_13698: 13500-14939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_157022_010 0.0 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
2 Hb_004889_020 0.0699544211 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
3 Hb_000403_060 0.077250731 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
4 Hb_001484_070 0.0800850438 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000236_040 0.0812841122 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
6 Hb_026889_030 0.0815806702 - - protein with unknown function [Ricinus communis]
7 Hb_000827_050 0.0826254345 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
8 Hb_000505_040 0.0837289812 - - -
9 Hb_000329_200 0.0881694522 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
10 Hb_003077_040 0.0889001575 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
11 Hb_055062_020 0.0921083696 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
12 Hb_005551_040 0.0926722122 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
13 Hb_004889_010 0.0948795435 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
14 Hb_000638_250 0.0952834816 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_001123_130 0.095385233 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
16 Hb_003813_030 0.0973199211 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
17 Hb_001604_060 0.0975507464 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
18 Hb_007044_120 0.0978680825 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
19 Hb_000261_140 0.0982833779 - - -
20 Hb_009182_010 0.0989887225 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_157022_010 Hb_157022_010 Hb_004889_020 Hb_004889_020 Hb_157022_010--Hb_004889_020 Hb_000403_060 Hb_000403_060 Hb_157022_010--Hb_000403_060 Hb_001484_070 Hb_001484_070 Hb_157022_010--Hb_001484_070 Hb_000236_040 Hb_000236_040 Hb_157022_010--Hb_000236_040 Hb_026889_030 Hb_026889_030 Hb_157022_010--Hb_026889_030 Hb_000827_050 Hb_000827_050 Hb_157022_010--Hb_000827_050 Hb_004889_020--Hb_026889_030 Hb_004157_020 Hb_004157_020 Hb_004889_020--Hb_004157_020 Hb_006326_040 Hb_006326_040 Hb_004889_020--Hb_006326_040 Hb_000676_390 Hb_000676_390 Hb_004889_020--Hb_000676_390 Hb_008071_020 Hb_008071_020 Hb_004889_020--Hb_008071_020 Hb_000175_340 Hb_000175_340 Hb_000403_060--Hb_000175_340 Hb_000638_250 Hb_000638_250 Hb_000403_060--Hb_000638_250 Hb_007044_120 Hb_007044_120 Hb_000403_060--Hb_007044_120 Hb_148121_040 Hb_148121_040 Hb_000403_060--Hb_148121_040 Hb_055062_020 Hb_055062_020 Hb_000403_060--Hb_055062_020 Hb_000920_110 Hb_000920_110 Hb_001484_070--Hb_000920_110 Hb_000453_120 Hb_000453_120 Hb_001484_070--Hb_000453_120 Hb_000261_140 Hb_000261_140 Hb_001484_070--Hb_000261_140 Hb_001979_040 Hb_001979_040 Hb_001484_070--Hb_001979_040 Hb_001085_120 Hb_001085_120 Hb_001484_070--Hb_001085_120 Hb_002056_050 Hb_002056_050 Hb_001484_070--Hb_002056_050 Hb_000236_040--Hb_000827_050 Hb_000205_090 Hb_000205_090 Hb_000236_040--Hb_000205_090 Hb_001633_050 Hb_001633_050 Hb_000236_040--Hb_001633_050 Hb_002014_020 Hb_002014_020 Hb_000236_040--Hb_002014_020 Hb_003304_020 Hb_003304_020 Hb_000236_040--Hb_003304_020 Hb_004058_030 Hb_004058_030 Hb_000236_040--Hb_004058_030 Hb_028872_080 Hb_028872_080 Hb_026889_030--Hb_028872_080 Hb_026889_030--Hb_008071_020 Hb_010361_010 Hb_010361_010 Hb_026889_030--Hb_010361_010 Hb_026889_030--Hb_000827_050 Hb_026889_030--Hb_000676_390 Hb_050514_010 Hb_050514_010 Hb_000827_050--Hb_050514_010 Hb_004109_170 Hb_004109_170 Hb_000827_050--Hb_004109_170 Hb_000260_030 Hb_000260_030 Hb_000827_050--Hb_000260_030 Hb_000003_230 Hb_000003_230 Hb_000827_050--Hb_000003_230 Hb_000827_050--Hb_000205_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.79992 0.519482 2.72503 1.65654 1.21261 1.90259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.41464 4.11175 3.33484 1.60405 1.13428

CAGE analysis