Hb_157349_010

Information

Type -
Description -
Location Contig157349: 257-593
Sequence    

Annotation

kegg
ID sot:102588546
description uncharacterized LOC102588546
nr
ID XP_006364031.1
description PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
swissprot
ID -
description -
trembl
ID Q948N8
description TdcA1-ORF1-ORF2 protein (Fragment) OS=Daucus carota GN=TdcA1-ORF1-ORF2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_157349_010 0.0 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
2 Hb_001274_010 0.0089158739 - - -
3 Hb_007586_020 0.0242160865 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_004888_050 0.0258268393 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_000483_170 0.0332201437 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
6 Hb_000589_430 0.0456272989 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
7 Hb_000085_110 0.062710622 - - hypothetical protein JCGZ_00957 [Jatropha curcas]
8 Hb_000245_240 0.0636468613 - - -
9 Hb_088224_010 0.0648891105 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
10 Hb_001792_010 0.0687645644 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
11 Hb_002641_150 0.0695263172 - - PREDICTED: stachyose synthase-like [Citrus sinensis]
12 Hb_000368_130 0.0695982121 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000055_100 0.0703675406 - - polyprotein [Oryza australiensis]
14 Hb_001998_040 0.0705993944 - - ATP binding protein, putative [Ricinus communis]
15 Hb_002260_230 0.0711130538 - - hypothetical protein SORBIDRAFT_05g006180 [Sorghum bicolor]
16 Hb_000463_110 0.079154493 - - -
17 Hb_002686_370 0.0793842727 - - PREDICTED: uncharacterized protein LOC102628436 [Citrus sinensis]
18 Hb_092416_010 0.0798742557 - - PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas]
19 Hb_073171_060 0.0831743943 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
20 Hb_142295_010 0.0859116048 - - -

Gene co-expression network

sample Hb_157349_010 Hb_157349_010 Hb_001274_010 Hb_001274_010 Hb_157349_010--Hb_001274_010 Hb_007586_020 Hb_007586_020 Hb_157349_010--Hb_007586_020 Hb_004888_050 Hb_004888_050 Hb_157349_010--Hb_004888_050 Hb_000483_170 Hb_000483_170 Hb_157349_010--Hb_000483_170 Hb_000589_430 Hb_000589_430 Hb_157349_010--Hb_000589_430 Hb_000085_110 Hb_000085_110 Hb_157349_010--Hb_000085_110 Hb_001274_010--Hb_000483_170 Hb_001274_010--Hb_007586_020 Hb_001274_010--Hb_004888_050 Hb_001274_010--Hb_000589_430 Hb_001792_010 Hb_001792_010 Hb_001274_010--Hb_001792_010 Hb_007586_020--Hb_004888_050 Hb_007586_020--Hb_000085_110 Hb_000245_240 Hb_000245_240 Hb_007586_020--Hb_000245_240 Hb_088224_010 Hb_088224_010 Hb_007586_020--Hb_088224_010 Hb_004888_050--Hb_000085_110 Hb_004888_050--Hb_000245_240 Hb_004888_050--Hb_088224_010 Hb_000483_170--Hb_000589_430 Hb_000483_170--Hb_001792_010 Hb_002641_150 Hb_002641_150 Hb_000483_170--Hb_002641_150 Hb_001998_040 Hb_001998_040 Hb_000483_170--Hb_001998_040 Hb_000589_430--Hb_001792_010 Hb_000589_430--Hb_002641_150 Hb_000589_430--Hb_001998_040 Hb_002260_230 Hb_002260_230 Hb_000589_430--Hb_002260_230 Hb_000463_110 Hb_000463_110 Hb_000589_430--Hb_000463_110 Hb_000085_110--Hb_000245_240 Hb_000085_110--Hb_088224_010 Hb_000368_130 Hb_000368_130 Hb_000085_110--Hb_000368_130 Hb_000055_100 Hb_000055_100 Hb_000085_110--Hb_000055_100 Hb_073171_060 Hb_073171_060 Hb_000085_110--Hb_073171_060 Hb_010272_020 Hb_010272_020 Hb_000085_110--Hb_010272_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 2.8417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.65393 0

CAGE analysis