Hb_157854_010

Information

Type -
Description -
Location Contig157854: 3714-6130
Sequence    

Annotation

kegg
ID rcu:RCOM_0820570
description transcription factor, putative
nr
ID XP_012082211.1
description PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16414 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13806: 4299-6131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_157854_010 0.0 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
2 Hb_002762_060 0.0584420767 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
3 Hb_118977_020 0.0795355884 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
4 Hb_003086_020 0.0798397447 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
5 Hb_003185_020 0.0811351764 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
6 Hb_022250_040 0.0838039547 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
7 Hb_004607_140 0.0851557329 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
8 Hb_000392_270 0.085184998 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
9 Hb_003086_110 0.0860635337 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
10 Hb_000272_100 0.0873495685 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
11 Hb_001951_110 0.0889289105 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
12 Hb_024835_030 0.0889641069 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
13 Hb_000371_080 0.0900375108 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
14 Hb_004012_010 0.0906897272 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
15 Hb_000282_060 0.090768301 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
16 Hb_134226_010 0.0922193242 - - 40S ribosomal protein S21e, putative [Ricinus communis]
17 Hb_000732_260 0.0929481391 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
18 Hb_001243_050 0.0932545041 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
19 Hb_004204_030 0.0933008394 - - unknown [Populus trichocarpa]
20 Hb_006447_010 0.0951125172 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]

Gene co-expression network

sample Hb_157854_010 Hb_157854_010 Hb_002762_060 Hb_002762_060 Hb_157854_010--Hb_002762_060 Hb_118977_020 Hb_118977_020 Hb_157854_010--Hb_118977_020 Hb_003086_020 Hb_003086_020 Hb_157854_010--Hb_003086_020 Hb_003185_020 Hb_003185_020 Hb_157854_010--Hb_003185_020 Hb_022250_040 Hb_022250_040 Hb_157854_010--Hb_022250_040 Hb_004607_140 Hb_004607_140 Hb_157854_010--Hb_004607_140 Hb_024835_030 Hb_024835_030 Hb_002762_060--Hb_024835_030 Hb_004221_010 Hb_004221_010 Hb_002762_060--Hb_004221_010 Hb_004920_040 Hb_004920_040 Hb_002762_060--Hb_004920_040 Hb_000720_120 Hb_000720_120 Hb_002762_060--Hb_000720_120 Hb_158092_070 Hb_158092_070 Hb_002762_060--Hb_158092_070 Hb_003086_110 Hb_003086_110 Hb_118977_020--Hb_003086_110 Hb_007166_050 Hb_007166_050 Hb_118977_020--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_118977_020--Hb_001019_090 Hb_000617_320 Hb_000617_320 Hb_118977_020--Hb_000617_320 Hb_001437_040 Hb_001437_040 Hb_118977_020--Hb_001437_040 Hb_003086_020--Hb_003086_110 Hb_000152_140 Hb_000152_140 Hb_003086_020--Hb_000152_140 Hb_133271_020 Hb_133271_020 Hb_003086_020--Hb_133271_020 Hb_000272_100 Hb_000272_100 Hb_003086_020--Hb_000272_100 Hb_004662_030 Hb_004662_030 Hb_003086_020--Hb_004662_030 Hb_010449_020 Hb_010449_020 Hb_003185_020--Hb_010449_020 Hb_004012_010 Hb_004012_010 Hb_003185_020--Hb_004012_010 Hb_003185_020--Hb_002762_060 Hb_000392_270 Hb_000392_270 Hb_003185_020--Hb_000392_270 Hb_004722_060 Hb_004722_060 Hb_003185_020--Hb_004722_060 Hb_009711_030 Hb_009711_030 Hb_022250_040--Hb_009711_030 Hb_000371_080 Hb_000371_080 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100 Hb_125000_010 Hb_125000_010 Hb_022250_040--Hb_125000_010 Hb_004607_140--Hb_000272_100 Hb_004204_030 Hb_004204_030 Hb_004607_140--Hb_004204_030 Hb_000163_200 Hb_000163_200 Hb_004607_140--Hb_000163_200 Hb_006824_020 Hb_006824_020 Hb_004607_140--Hb_006824_020 Hb_000732_260 Hb_000732_260 Hb_004607_140--Hb_000732_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.6832 18.0264 9.14272 7.0235 45.8888 52.4013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.0365 55.1748 36.205 19.8311 2.93756

CAGE analysis