Hb_157881_010

Information

Type -
Description -
Location Contig157881: 1440-1928
Sequence    

Annotation

kegg
ID rcu:RCOM_1579710
description ubiquitin-protein ligase, putative
nr
ID XP_002513564.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID P0CH02
description Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana GN=ATL21B PE=3 SV=1
trembl
ID B9RIJ5
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1579710 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable receptor-like protein kinase at5g39020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_157881_010 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_004342_040 0.0418135984 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
3 Hb_001976_070 0.0643903404 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
4 Hb_061335_010 0.0682632464 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
5 Hb_005057_020 0.0806635191 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
6 Hb_132880_020 0.0914125495 - - hypothetical protein VITISV_026364 [Vitis vinifera]
7 Hb_000696_120 0.0980437583 - - PREDICTED: protein FD [Populus euphratica]
8 Hb_179367_020 0.1053505715 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
9 Hb_003878_130 0.1067890795 - - -
10 Hb_122079_010 0.1069830224 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
11 Hb_000908_030 0.1072723462 - - small heat-shock protein, putative [Ricinus communis]
12 Hb_001006_080 0.1090810927 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
13 Hb_003216_010 0.1110317236 - - glycosyl hydrolase family protein [Populus trichocarpa]
14 Hb_002534_140 0.1149139436 - - hypothetical protein JCGZ_11629 [Jatropha curcas]
15 Hb_000009_100 0.1162603117 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
16 Hb_010080_040 0.119203935 - - conserved hypothetical protein [Ricinus communis]
17 Hb_135592_010 0.1211939701 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000053_150 0.1219732311 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
19 Hb_005951_010 0.1249559061 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001152_040 0.1279094183 - - peripheral-type benzodiazepine receptor, putative [Ricinus communis]

Gene co-expression network

sample Hb_157881_010 Hb_157881_010 Hb_004342_040 Hb_004342_040 Hb_157881_010--Hb_004342_040 Hb_001976_070 Hb_001976_070 Hb_157881_010--Hb_001976_070 Hb_061335_010 Hb_061335_010 Hb_157881_010--Hb_061335_010 Hb_005057_020 Hb_005057_020 Hb_157881_010--Hb_005057_020 Hb_132880_020 Hb_132880_020 Hb_157881_010--Hb_132880_020 Hb_000696_120 Hb_000696_120 Hb_157881_010--Hb_000696_120 Hb_004342_040--Hb_005057_020 Hb_004342_040--Hb_061335_010 Hb_004342_040--Hb_000696_120 Hb_003216_010 Hb_003216_010 Hb_004342_040--Hb_003216_010 Hb_122079_010 Hb_122079_010 Hb_004342_040--Hb_122079_010 Hb_179367_020 Hb_179367_020 Hb_001976_070--Hb_179367_020 Hb_000908_030 Hb_000908_030 Hb_001976_070--Hb_000908_030 Hb_001976_070--Hb_132880_020 Hb_003878_130 Hb_003878_130 Hb_001976_070--Hb_003878_130 Hb_001152_040 Hb_001152_040 Hb_001976_070--Hb_001152_040 Hb_061335_010--Hb_122079_010 Hb_061335_010--Hb_005057_020 Hb_000053_150 Hb_000053_150 Hb_061335_010--Hb_000053_150 Hb_010812_080 Hb_010812_080 Hb_061335_010--Hb_010812_080 Hb_005057_020--Hb_003216_010 Hb_005057_020--Hb_000053_150 Hb_005057_020--Hb_000696_120 Hb_005057_020--Hb_122079_010 Hb_178968_010 Hb_178968_010 Hb_005057_020--Hb_178968_010 Hb_000009_100 Hb_000009_100 Hb_132880_020--Hb_000009_100 Hb_132880_020--Hb_001152_040 Hb_132880_020--Hb_179367_020 Hb_132880_020--Hb_000908_030 Hb_174829_030 Hb_174829_030 Hb_000696_120--Hb_174829_030 Hb_001006_080 Hb_001006_080 Hb_000696_120--Hb_001006_080 Hb_000696_120--Hb_003216_010 Hb_010080_040 Hb_010080_040 Hb_000696_120--Hb_010080_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.102097 0.61727 1.7729 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis