Hb_157968_010

Information

Type -
Description -
Location Contig157968: 418-960
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable disease resistance protein at4g27220

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_157968_010 0.0 - - Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_002078_190 0.1588798299 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001708_010 0.2052062826 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]
4 Hb_148658_010 0.2174172426 - - -
5 Hb_048183_010 0.2456700474 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
6 Hb_116367_010 0.2467177193 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Pyrus x bretschneideri]
7 Hb_001810_020 0.2520299278 - - -
8 Hb_022614_010 0.2523694522 - - -
9 Hb_000066_180 0.2556654177 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
10 Hb_072290_010 0.2579633231 - - PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
11 Hb_133648_010 0.2580477199 - - -
12 Hb_162090_010 0.2587617112 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
13 Hb_106873_020 0.2687424965 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
14 Hb_002820_130 0.269822599 - - -
15 Hb_003531_010 0.2726527525 - - scab resistance family protein [Populus trichocarpa]
16 Hb_090545_010 0.2783477858 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
17 Hb_007889_050 0.2836421579 - - Kynurenine formamidase [Gossypium arboreum]
18 Hb_114079_010 0.2885481195 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
19 Hb_027287_010 0.2892737675 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003740_040 0.2901804428 - - Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative [Ricinus communis]

Gene co-expression network

sample Hb_157968_010 Hb_157968_010 Hb_002078_190 Hb_002078_190 Hb_157968_010--Hb_002078_190 Hb_001708_010 Hb_001708_010 Hb_157968_010--Hb_001708_010 Hb_148658_010 Hb_148658_010 Hb_157968_010--Hb_148658_010 Hb_048183_010 Hb_048183_010 Hb_157968_010--Hb_048183_010 Hb_116367_010 Hb_116367_010 Hb_157968_010--Hb_116367_010 Hb_001810_020 Hb_001810_020 Hb_157968_010--Hb_001810_020 Hb_002078_190--Hb_148658_010 Hb_007889_050 Hb_007889_050 Hb_002078_190--Hb_007889_050 Hb_002078_190--Hb_001708_010 Hb_001950_040 Hb_001950_040 Hb_002078_190--Hb_001950_040 Hb_002078_190--Hb_116367_010 Hb_007441_090 Hb_007441_090 Hb_001708_010--Hb_007441_090 Hb_106688_010 Hb_106688_010 Hb_001708_010--Hb_106688_010 Hb_114079_010 Hb_114079_010 Hb_001708_010--Hb_114079_010 Hb_003740_040 Hb_003740_040 Hb_001708_010--Hb_003740_040 Hb_001708_010--Hb_048183_010 Hb_106873_020 Hb_106873_020 Hb_148658_010--Hb_106873_020 Hb_027287_010 Hb_027287_010 Hb_148658_010--Hb_027287_010 Hb_000066_180 Hb_000066_180 Hb_148658_010--Hb_000066_180 Hb_148658_010--Hb_116367_010 Hb_007416_080 Hb_007416_080 Hb_048183_010--Hb_007416_080 Hb_133648_010 Hb_133648_010 Hb_048183_010--Hb_133648_010 Hb_072290_010 Hb_072290_010 Hb_048183_010--Hb_072290_010 Hb_178711_010 Hb_178711_010 Hb_048183_010--Hb_178711_010 Hb_000164_130 Hb_000164_130 Hb_048183_010--Hb_000164_130 Hb_003531_010 Hb_003531_010 Hb_116367_010--Hb_003531_010 Hb_003641_010 Hb_003641_010 Hb_116367_010--Hb_003641_010 Hb_116367_010--Hb_027287_010 Hb_013040_010 Hb_013040_010 Hb_116367_010--Hb_013040_010 Hb_001660_140 Hb_001660_140 Hb_116367_010--Hb_001660_140 Hb_002023_040 Hb_002023_040 Hb_001810_020--Hb_002023_040 Hb_001810_020--Hb_148658_010 Hb_001810_020--Hb_000066_180 Hb_090545_010 Hb_090545_010 Hb_001810_020--Hb_090545_010 Hb_001810_020--Hb_007416_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.165139 1.23278 0.0385974 3.3884 0.0508019 2.69269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.184786 0 0.419587 0

CAGE analysis