Hb_158062_010

Information

Type -
Description -
Location Contig158062: 847-2462
Sequence    

Annotation

kegg
ID rcu:RCOM_0937120
description cation:cation antiporter, putative
nr
ID XP_012072666.1
description PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LN58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13867: 2370-3367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158062_010 0.0 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
2 Hb_000205_300 0.0662803638 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
3 Hb_007059_010 0.0681717673 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
4 Hb_000146_050 0.069376797 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
5 Hb_004310_020 0.0715592692 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
6 Hb_003964_070 0.0726972737 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
7 Hb_003549_150 0.0741569977 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
8 Hb_040262_010 0.0741983886 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
9 Hb_001051_080 0.0752005422 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
10 Hb_000120_670 0.075266293 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
11 Hb_007317_110 0.076897207 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
12 Hb_003693_070 0.0785018165 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
13 Hb_010712_030 0.0800618124 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000603_150 0.0819308663 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
15 Hb_002783_240 0.0830885301 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
16 Hb_103012_010 0.0832190392 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
17 Hb_003665_060 0.0843654052 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
18 Hb_000808_280 0.0849743642 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007416_300 0.0850950677 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
20 Hb_005357_080 0.085258535 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_158062_010 Hb_158062_010 Hb_000205_300 Hb_000205_300 Hb_158062_010--Hb_000205_300 Hb_007059_010 Hb_007059_010 Hb_158062_010--Hb_007059_010 Hb_000146_050 Hb_000146_050 Hb_158062_010--Hb_000146_050 Hb_004310_020 Hb_004310_020 Hb_158062_010--Hb_004310_020 Hb_003964_070 Hb_003964_070 Hb_158062_010--Hb_003964_070 Hb_003549_150 Hb_003549_150 Hb_158062_010--Hb_003549_150 Hb_000603_150 Hb_000603_150 Hb_000205_300--Hb_000603_150 Hb_000205_300--Hb_004310_020 Hb_000120_670 Hb_000120_670 Hb_000205_300--Hb_000120_670 Hb_003693_070 Hb_003693_070 Hb_000205_300--Hb_003693_070 Hb_010712_030 Hb_010712_030 Hb_000205_300--Hb_010712_030 Hb_006827_020 Hb_006827_020 Hb_007059_010--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_007059_010--Hb_007317_110 Hb_002783_240 Hb_002783_240 Hb_007059_010--Hb_002783_240 Hb_000538_100 Hb_000538_100 Hb_007059_010--Hb_000538_100 Hb_103012_010 Hb_103012_010 Hb_007059_010--Hb_103012_010 Hb_009775_020 Hb_009775_020 Hb_007059_010--Hb_009775_020 Hb_090051_030 Hb_090051_030 Hb_000146_050--Hb_090051_030 Hb_012322_020 Hb_012322_020 Hb_000146_050--Hb_012322_020 Hb_001633_130 Hb_001633_130 Hb_000146_050--Hb_001633_130 Hb_000146_050--Hb_000603_150 Hb_000146_050--Hb_000205_300 Hb_004310_020--Hb_010712_030 Hb_001135_130 Hb_001135_130 Hb_004310_020--Hb_001135_130 Hb_001051_080 Hb_001051_080 Hb_004310_020--Hb_001051_080 Hb_004310_020--Hb_003549_150 Hb_003665_060 Hb_003665_060 Hb_003964_070--Hb_003665_060 Hb_003964_070--Hb_007317_110 Hb_003964_070--Hb_000120_670 Hb_001357_350 Hb_001357_350 Hb_003964_070--Hb_001357_350 Hb_000345_240 Hb_000345_240 Hb_003964_070--Hb_000345_240 Hb_010381_090 Hb_010381_090 Hb_003964_070--Hb_010381_090 Hb_007416_300 Hb_007416_300 Hb_003549_150--Hb_007416_300 Hb_003549_150--Hb_010381_090 Hb_003549_150--Hb_000603_150 Hb_000617_100 Hb_000617_100 Hb_003549_150--Hb_000617_100 Hb_003549_150--Hb_001051_080 Hb_001408_040 Hb_001408_040 Hb_003549_150--Hb_001408_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.9977 22.0327 28.7706 46.6777 42.305 51.9551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.9316 36.5366 27.9024 31.0819 12.9368

CAGE analysis