Hb_158092_010

Information

Type -
Description -
Location Contig158092: 5976-9244
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16010g
description POPTRDRAFT_554675; cytochrome p450 51 family protein
nr
ID AIU41378.1
description CYP51 [Hevea brasiliensis]
swissprot
ID Q9SAA9
description Sterol 14-demethylase OS=Arabidopsis thaliana GN=CYP51G1 PE=1 SV=1
trembl
ID A0A097P981
description CYP51 OS=Hevea brasiliensis GN=CYP51 PE=2 SV=1
Gene Ontology
ID GO:0005783
description sterol 14-demethylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13911: 6264-9215 , PASA_asmbl_13912: 6558-9215
cDNA
(Sanger)
(ID:Location)		 006_N10.ab1: 6400-8057 , 022_F22.ab1: 6400-7249 , 023_N07.ab1: 6400-7186 , 026_K04.ab1: 6400-7259 , 026_L12.ab1: 6400-7183 , 033_C11.ab1: 6400-8120 , 041_M16.ab1: 6400-7191

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158092_010 0.0 - - CYP51 [Hevea brasiliensis]
2 Hb_003462_120 0.1166340414 - - Acidic endochitinase [Theobroma cacao]
3 Hb_001377_420 0.1285709692 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001080_280 0.1329558847 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
5 Hb_001638_230 0.1358292615 - - RNA-binding region-containing protein, putative [Ricinus communis]
6 Hb_000731_260 0.1406180684 - - hypothetical protein RCOM_0905090 [Ricinus communis]
7 Hb_148209_010 0.1430150042 - - RAS-related GTP-binding family protein [Populus trichocarpa]
8 Hb_000521_130 0.1439257272 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
9 Hb_005098_030 0.1464522713 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
10 Hb_000108_070 0.1478511586 - - alpha-tubulin 1 [Hevea brasiliensis]
11 Hb_002217_230 0.1486030314 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
12 Hb_004679_050 0.1493116574 - - galactono-1,4-lactone dehydrogenase, putative [Ricinus communis]
13 Hb_001519_030 0.149620019 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
14 Hb_004800_100 0.1500053402 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000175_030 0.1510081211 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
16 Hb_002681_200 0.1510313602 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
17 Hb_004672_010 0.1513607397 - - ecotropic viral integration site, putative [Ricinus communis]
18 Hb_000934_190 0.1522724168 - - SER/ARG-rich protein 34A [Theobroma cacao]
19 Hb_004705_120 0.154221702 - - ATP binding protein, putative [Ricinus communis]
20 Hb_015778_010 0.1558574441 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_158092_010 Hb_158092_010 Hb_003462_120 Hb_003462_120 Hb_158092_010--Hb_003462_120 Hb_001377_420 Hb_001377_420 Hb_158092_010--Hb_001377_420 Hb_001080_280 Hb_001080_280 Hb_158092_010--Hb_001080_280 Hb_001638_230 Hb_001638_230 Hb_158092_010--Hb_001638_230 Hb_000731_260 Hb_000731_260 Hb_158092_010--Hb_000731_260 Hb_148209_010 Hb_148209_010 Hb_158092_010--Hb_148209_010 Hb_001481_140 Hb_001481_140 Hb_003462_120--Hb_001481_140 Hb_005137_060 Hb_005137_060 Hb_003462_120--Hb_005137_060 Hb_004672_010 Hb_004672_010 Hb_003462_120--Hb_004672_010 Hb_000175_030 Hb_000175_030 Hb_003462_120--Hb_000175_030 Hb_000934_190 Hb_000934_190 Hb_003462_120--Hb_000934_190 Hb_003783_030 Hb_003783_030 Hb_003462_120--Hb_003783_030 Hb_001242_050 Hb_001242_050 Hb_001377_420--Hb_001242_050 Hb_005496_090 Hb_005496_090 Hb_001377_420--Hb_005496_090 Hb_000928_110 Hb_000928_110 Hb_001377_420--Hb_000928_110 Hb_005356_040 Hb_005356_040 Hb_001377_420--Hb_005356_040 Hb_001377_420--Hb_003462_120 Hb_004705_120 Hb_004705_120 Hb_001080_280--Hb_004705_120 Hb_001519_030 Hb_001519_030 Hb_001080_280--Hb_001519_030 Hb_000635_150 Hb_000635_150 Hb_001080_280--Hb_000635_150 Hb_000123_170 Hb_000123_170 Hb_001080_280--Hb_000123_170 Hb_001105_070 Hb_001105_070 Hb_001080_280--Hb_001105_070 Hb_011953_020 Hb_011953_020 Hb_001080_280--Hb_011953_020 Hb_002217_230 Hb_002217_230 Hb_001638_230--Hb_002217_230 Hb_004800_100 Hb_004800_100 Hb_001638_230--Hb_004800_100 Hb_002681_200 Hb_002681_200 Hb_001638_230--Hb_002681_200 Hb_000108_070 Hb_000108_070 Hb_001638_230--Hb_000108_070 Hb_189216_030 Hb_189216_030 Hb_001638_230--Hb_189216_030 Hb_000731_260--Hb_004705_120 Hb_004679_050 Hb_004679_050 Hb_000731_260--Hb_004679_050 Hb_000731_260--Hb_000108_070 Hb_000731_260--Hb_001080_280 Hb_000521_130 Hb_000521_130 Hb_000731_260--Hb_000521_130 Hb_148113_010 Hb_148113_010 Hb_000731_260--Hb_148113_010 Hb_003291_020 Hb_003291_020 Hb_148209_010--Hb_003291_020 Hb_002303_060 Hb_002303_060 Hb_148209_010--Hb_002303_060 Hb_001123_160 Hb_001123_160 Hb_148209_010--Hb_001123_160 Hb_000922_040 Hb_000922_040 Hb_148209_010--Hb_000922_040 Hb_000563_200 Hb_000563_200 Hb_148209_010--Hb_000563_200 Hb_000384_120 Hb_000384_120 Hb_148209_010--Hb_000384_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3058 21.4525 33.9671 104.685 15.933 19.0247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
121.626 76.6847 138.353 49.3526 22.7913

CAGE analysis