Hb_158092_050

Information

Type -
Description -
Location Contig158092: 37445-41185
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12940g
description POPTRDRAFT_640119; exostosin family protein
nr
ID XP_012088709.1
description PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
swissprot
ID Q9FZJ1
description Probable beta-1,4-xylosyltransferase IRX10 OS=Arabidopsis thaliana GN=IRX10 PE=2 SV=1
trembl
ID A0A067JH72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23089 PE=4 SV=1
Gene Ontology
ID GO:0080116
description probable beta- -xylosyltransferase irx10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13915: 37342-39947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158092_050 0.0 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
2 Hb_000173_240 0.0894813452 - - conserved hypothetical protein [Ricinus communis]
3 Hb_116701_010 0.0898675865 - - hypothetical protein POPTR_0005s19410g [Populus trichocarpa]
4 Hb_000130_350 0.0923994451 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_008461_060 0.0940027495 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
6 Hb_031284_060 0.0948172926 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
7 Hb_000193_320 0.1034730395 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002078_180 0.1076942217 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
9 Hb_001366_110 0.107719209 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009476_080 0.1157857797 - - BnaA03g18920D [Brassica napus]
11 Hb_015807_090 0.118789848 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
12 Hb_008762_010 0.1234791104 - - dopamine beta-monooxygenase, putative [Ricinus communis]
13 Hb_000086_490 0.1241420939 - - cellulose synthase [Populus tomentosa]
14 Hb_005686_040 0.1242612421 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002835_360 0.124501863 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
16 Hb_001189_080 0.1249960873 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001712_030 0.1270585742 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
18 Hb_005523_030 0.1272481831 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
19 Hb_001935_060 0.1272587622 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
20 Hb_038927_020 0.1290137546 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]

Gene co-expression network

sample Hb_158092_050 Hb_158092_050 Hb_000173_240 Hb_000173_240 Hb_158092_050--Hb_000173_240 Hb_116701_010 Hb_116701_010 Hb_158092_050--Hb_116701_010 Hb_000130_350 Hb_000130_350 Hb_158092_050--Hb_000130_350 Hb_008461_060 Hb_008461_060 Hb_158092_050--Hb_008461_060 Hb_031284_060 Hb_031284_060 Hb_158092_050--Hb_031284_060 Hb_000193_320 Hb_000193_320 Hb_158092_050--Hb_000193_320 Hb_002078_180 Hb_002078_180 Hb_000173_240--Hb_002078_180 Hb_000173_240--Hb_000193_320 Hb_009476_080 Hb_009476_080 Hb_000173_240--Hb_009476_080 Hb_002835_360 Hb_002835_360 Hb_000173_240--Hb_002835_360 Hb_001935_060 Hb_001935_060 Hb_000173_240--Hb_001935_060 Hb_005686_040 Hb_005686_040 Hb_000173_240--Hb_005686_040 Hb_116701_010--Hb_000130_350 Hb_000428_040 Hb_000428_040 Hb_116701_010--Hb_000428_040 Hb_008762_010 Hb_008762_010 Hb_116701_010--Hb_008762_010 Hb_116701_010--Hb_000173_240 Hb_001366_110 Hb_001366_110 Hb_116701_010--Hb_001366_110 Hb_000130_350--Hb_031284_060 Hb_000130_350--Hb_000173_240 Hb_000130_350--Hb_008762_010 Hb_000130_350--Hb_000428_040 Hb_002151_070 Hb_002151_070 Hb_008461_060--Hb_002151_070 Hb_001289_070 Hb_001289_070 Hb_008461_060--Hb_001289_070 Hb_002081_020 Hb_002081_020 Hb_008461_060--Hb_002081_020 Hb_000813_070 Hb_000813_070 Hb_008461_060--Hb_000813_070 Hb_001001_070 Hb_001001_070 Hb_008461_060--Hb_001001_070 Hb_031284_060--Hb_000193_320 Hb_000328_030 Hb_000328_030 Hb_031284_060--Hb_000328_030 Hb_001712_030 Hb_001712_030 Hb_031284_060--Hb_001712_030 Hb_005523_030 Hb_005523_030 Hb_031284_060--Hb_005523_030 Hb_031284_060--Hb_002078_180 Hb_000086_490 Hb_000086_490 Hb_031284_060--Hb_000086_490 Hb_000193_320--Hb_002078_180 Hb_001500_090 Hb_001500_090 Hb_000193_320--Hb_001500_090 Hb_000776_090 Hb_000776_090 Hb_000193_320--Hb_000776_090 Hb_000193_320--Hb_009476_080 Hb_000193_320--Hb_000086_490 Hb_015807_090 Hb_015807_090 Hb_000193_320--Hb_015807_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.53189 7.60489 10.0475 140.898 1.67399 0.844573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.21673 0.362351 4.10281 2.14913 100.234

CAGE analysis