Hb_158092_100

Information

Type -
Description -
Location Contig158092: 71461-77138
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09760g
description POPTRDRAFT_815074; hypothetical protein
nr
ID XP_012088715.1
description PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JH76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23094 PE=4 SV=1
Gene Ontology
ID GO:0009507
description PREDICTED: uncharacterized protein LOC105647301

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13919: 71936-72161 , PASA_asmbl_13920: 72406-76953
cDNA
(Sanger)
(ID:Location)		 011_E06.ab1: 72720-76953 , 042_G18.ab1: 72922-76953

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158092_100 0.0 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
2 Hb_002044_160 0.0776342982 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
3 Hb_009687_020 0.0820042182 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
4 Hb_006420_010 0.0834902613 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
5 Hb_007904_060 0.0874661368 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
6 Hb_000473_050 0.0924934744 - - chromatin regulatory protein sir2, putative [Ricinus communis]
7 Hb_004055_160 0.0944245164 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
8 Hb_000108_150 0.0958129006 - - alpha/beta hydrolase, putative [Ricinus communis]
9 Hb_002759_120 0.0999981201 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002005_040 0.1000166211 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_002374_450 0.1010750173 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
12 Hb_001269_500 0.1044810248 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
13 Hb_000264_280 0.1053260516 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
14 Hb_003752_090 0.1054937861 - - chitinase, putative [Ricinus communis]
15 Hb_000454_100 0.1057201516 - - aldo-keto reductase, putative [Ricinus communis]
16 Hb_006829_080 0.106197283 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
17 Hb_032631_070 0.1080501601 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
18 Hb_000579_040 0.108405448 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
19 Hb_000951_120 0.1134601721 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
20 Hb_005784_030 0.1143811284 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_158092_100 Hb_158092_100 Hb_002044_160 Hb_002044_160 Hb_158092_100--Hb_002044_160 Hb_009687_020 Hb_009687_020 Hb_158092_100--Hb_009687_020 Hb_006420_010 Hb_006420_010 Hb_158092_100--Hb_006420_010 Hb_007904_060 Hb_007904_060 Hb_158092_100--Hb_007904_060 Hb_000473_050 Hb_000473_050 Hb_158092_100--Hb_000473_050 Hb_004055_160 Hb_004055_160 Hb_158092_100--Hb_004055_160 Hb_000454_100 Hb_000454_100 Hb_002044_160--Hb_000454_100 Hb_002005_040 Hb_002005_040 Hb_002044_160--Hb_002005_040 Hb_000579_040 Hb_000579_040 Hb_002044_160--Hb_000579_040 Hb_002374_450 Hb_002374_450 Hb_002044_160--Hb_002374_450 Hb_002044_160--Hb_004055_160 Hb_003171_030 Hb_003171_030 Hb_009687_020--Hb_003171_030 Hb_006198_130 Hb_006198_130 Hb_009687_020--Hb_006198_130 Hb_009687_020--Hb_004055_160 Hb_001269_500 Hb_001269_500 Hb_009687_020--Hb_001269_500 Hb_009687_020--Hb_000473_050 Hb_006420_010--Hb_007904_060 Hb_000264_280 Hb_000264_280 Hb_006420_010--Hb_000264_280 Hb_000108_150 Hb_000108_150 Hb_006420_010--Hb_000108_150 Hb_000061_250 Hb_000061_250 Hb_006420_010--Hb_000061_250 Hb_004162_270 Hb_004162_270 Hb_006420_010--Hb_004162_270 Hb_005784_030 Hb_005784_030 Hb_007904_060--Hb_005784_030 Hb_007904_060--Hb_000108_150 Hb_003020_250 Hb_003020_250 Hb_007904_060--Hb_003020_250 Hb_003752_090 Hb_003752_090 Hb_007904_060--Hb_003752_090 Hb_006829_080 Hb_006829_080 Hb_000473_050--Hb_006829_080 Hb_189003_060 Hb_189003_060 Hb_000473_050--Hb_189003_060 Hb_001959_060 Hb_001959_060 Hb_000473_050--Hb_001959_060 Hb_000684_430 Hb_000684_430 Hb_000473_050--Hb_000684_430 Hb_004055_160--Hb_002005_040 Hb_004055_160--Hb_000684_430 Hb_004055_160--Hb_006829_080 Hb_005116_100 Hb_005116_100 Hb_004055_160--Hb_005116_100 Hb_001348_090 Hb_001348_090 Hb_004055_160--Hb_001348_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.80431 7.22665 46.9555 31.6419 6.37223 5.6767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0982 8.41413 4.77989 13.9423 64.8818

CAGE analysis