Hb_158110_010

Information

Type -
Description -
Location Contig158110: 356-1133
Sequence    

Annotation

kegg
ID cic:CICLE_v10012017mg
description hypothetical protein
nr
ID XP_006430321.1
description hypothetical protein CICLE_v10012017mg [Citrus clementina]
swissprot
ID Q8VYJ2
description AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana GN=AHL1 PE=1 SV=1
trembl
ID V4T1Z8
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012017mg PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158110_010 0.0 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
2 Hb_128460_020 0.0631331223 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
3 Hb_014361_140 0.0665164915 - - PREDICTED: peroxidase 51 [Jatropha curcas]
4 Hb_000061_060 0.066977533 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
5 Hb_053935_010 0.0673763501 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
6 Hb_004241_190 0.0798993886 - - -
7 Hb_000373_220 0.0809480402 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
8 Hb_010369_010 0.0924463756 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000769_030 0.0967131269 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_104855_010 0.101499394 - - -
11 Hb_004924_020 0.1063418394 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000628_050 0.1122225841 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_006916_220 0.112455811 - - hypothetical protein JCGZ_20099 [Jatropha curcas]
14 Hb_000668_220 0.1126277803 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
15 Hb_000925_020 0.1156047199 - - PREDICTED: protein YLS9 [Jatropha curcas]
16 Hb_011429_010 0.1157801921 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
17 Hb_008963_010 0.1170887855 desease resistance Gene Name: LRR_4 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
18 Hb_173029_010 0.1203838449 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_005773_010 0.1241213025 - - -
20 Hb_182625_010 0.1279432038 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]

Gene co-expression network

sample Hb_158110_010 Hb_158110_010 Hb_128460_020 Hb_128460_020 Hb_158110_010--Hb_128460_020 Hb_014361_140 Hb_014361_140 Hb_158110_010--Hb_014361_140 Hb_000061_060 Hb_000061_060 Hb_158110_010--Hb_000061_060 Hb_053935_010 Hb_053935_010 Hb_158110_010--Hb_053935_010 Hb_004241_190 Hb_004241_190 Hb_158110_010--Hb_004241_190 Hb_000373_220 Hb_000373_220 Hb_158110_010--Hb_000373_220 Hb_128460_020--Hb_014361_140 Hb_128460_020--Hb_053935_010 Hb_128460_020--Hb_000061_060 Hb_128460_020--Hb_000373_220 Hb_128460_020--Hb_004241_190 Hb_014361_140--Hb_000061_060 Hb_014361_140--Hb_053935_010 Hb_104855_010 Hb_104855_010 Hb_014361_140--Hb_104855_010 Hb_014361_140--Hb_004241_190 Hb_000061_060--Hb_053935_010 Hb_000061_060--Hb_004241_190 Hb_000061_060--Hb_104855_010 Hb_053935_010--Hb_000373_220 Hb_053935_010--Hb_004241_190 Hb_004241_190--Hb_000373_220 Hb_000628_050 Hb_000628_050 Hb_004241_190--Hb_000628_050 Hb_173029_010 Hb_173029_010 Hb_004241_190--Hb_173029_010 Hb_000668_220 Hb_000668_220 Hb_000373_220--Hb_000668_220 Hb_000373_220--Hb_000061_060 Hb_000373_220--Hb_014361_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.44323 1.86505 3.54105 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0696477 0

CAGE analysis