Hb_158123_010

Information

Type -
Description -
Location Contig158123: 2-866
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13933: 255-607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158123_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_006483_050 0.0935660385 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
3 Hb_002311_490 0.094697679 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
4 Hb_000210_150 0.1044167363 - - PREDICTED: protein YLS9-like [Jatropha curcas]
5 Hb_011287_020 0.1083566004 - - ATP binding protein, putative [Ricinus communis]
6 Hb_035391_010 0.1151673012 - - TMV resistance protein N, putative [Ricinus communis]
7 Hb_000465_330 0.1173445293 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
8 Hb_000316_150 0.1240982264 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
9 Hb_000506_140 0.1243979787 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
10 Hb_116349_090 0.1290745699 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
11 Hb_001846_040 0.1335044628 - - cytochrome P450, putative [Ricinus communis]
12 Hb_121913_010 0.1354463482 - - Disease resistance protein RPS5, putative [Ricinus communis]
13 Hb_073870_020 0.1357688268 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
14 Hb_016404_010 0.1363576209 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
15 Hb_000434_050 0.1380807508 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
16 Hb_000181_080 0.1382302654 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
17 Hb_025477_020 0.1383660504 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
18 Hb_027214_060 0.1406506461 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
19 Hb_004324_290 0.1412529741 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
20 Hb_174829_040 0.1415860695 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]

Gene co-expression network

sample Hb_158123_010 Hb_158123_010 Hb_006483_050 Hb_006483_050 Hb_158123_010--Hb_006483_050 Hb_002311_490 Hb_002311_490 Hb_158123_010--Hb_002311_490 Hb_000210_150 Hb_000210_150 Hb_158123_010--Hb_000210_150 Hb_011287_020 Hb_011287_020 Hb_158123_010--Hb_011287_020 Hb_035391_010 Hb_035391_010 Hb_158123_010--Hb_035391_010 Hb_000465_330 Hb_000465_330 Hb_158123_010--Hb_000465_330 Hb_006483_050--Hb_011287_020 Hb_000316_150 Hb_000316_150 Hb_006483_050--Hb_000316_150 Hb_000016_220 Hb_000016_220 Hb_006483_050--Hb_000016_220 Hb_001846_040 Hb_001846_040 Hb_006483_050--Hb_001846_040 Hb_000322_020 Hb_000322_020 Hb_006483_050--Hb_000322_020 Hb_000506_140 Hb_000506_140 Hb_002311_490--Hb_000506_140 Hb_000563_460 Hb_000563_460 Hb_002311_490--Hb_000563_460 Hb_174829_040 Hb_174829_040 Hb_002311_490--Hb_174829_040 Hb_002311_490--Hb_000465_330 Hb_002311_490--Hb_035391_010 Hb_025477_020 Hb_025477_020 Hb_000210_150--Hb_025477_020 Hb_004267_070 Hb_004267_070 Hb_000210_150--Hb_004267_070 Hb_000210_150--Hb_035391_010 Hb_027214_060 Hb_027214_060 Hb_000210_150--Hb_027214_060 Hb_000210_150--Hb_000316_150 Hb_011287_020--Hb_001846_040 Hb_009476_010 Hb_009476_010 Hb_011287_020--Hb_009476_010 Hb_001477_080 Hb_001477_080 Hb_011287_020--Hb_001477_080 Hb_000805_150 Hb_000805_150 Hb_011287_020--Hb_000805_150 Hb_019654_010 Hb_019654_010 Hb_011287_020--Hb_019654_010 Hb_003582_020 Hb_003582_020 Hb_035391_010--Hb_003582_020 Hb_035391_010--Hb_025477_020 Hb_055706_010 Hb_055706_010 Hb_035391_010--Hb_055706_010 Hb_136027_010 Hb_136027_010 Hb_035391_010--Hb_136027_010 Hb_000465_330--Hb_000506_140 Hb_016404_010 Hb_016404_010 Hb_000465_330--Hb_016404_010 Hb_000796_200 Hb_000796_200 Hb_000465_330--Hb_000796_200 Hb_121913_010 Hb_121913_010 Hb_000465_330--Hb_121913_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.61461 102.166 12.3154 16.8239 0.277008 0.1579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51282 1.36779 1.17349 1.78688 1.30131

CAGE analysis