Hb_158163_010

Information

Type -
Description -
Location Contig158163: 56-430
Sequence    

Annotation

kegg
ID rcu:RCOM_0609590
description protein binding protein, putative
nr
ID XP_002521987.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7L8
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0609590 PE=4 SV=1
Gene Ontology
ID GO:0005886
description ankyrin repeat family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158163_010 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_008642_030 0.0940125604 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
3 Hb_012022_050 0.1164033926 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
4 Hb_001953_080 0.1317035979 - - pseudouridine synthase family protein, partial [Manihot esculenta]
5 Hb_000136_100 0.1351203817 - - PREDICTED: syntaxin-61 [Jatropha curcas]
6 Hb_007383_020 0.1352797239 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002154_110 0.1368735474 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
8 Hb_025098_010 0.1394228792 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_002284_230 0.141945396 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
10 Hb_007054_010 0.1437734991 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
11 Hb_003305_020 0.1459427147 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
12 Hb_002477_010 0.1464813114 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003697_050 0.146731178 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
14 Hb_002735_050 0.1469279114 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
15 Hb_001242_080 0.1484750322 - - PREDICTED: UDP-galactose transporter 2-like [Populus euphratica]
16 Hb_000586_030 0.1485049897 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
17 Hb_000563_200 0.1498667127 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
18 Hb_010997_090 0.1504047677 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
19 Hb_022593_010 0.1504728358 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
20 Hb_006153_030 0.1506009695 - - PREDICTED: probable transaldolase [Jatropha curcas]

Gene co-expression network

sample Hb_158163_010 Hb_158163_010 Hb_008642_030 Hb_008642_030 Hb_158163_010--Hb_008642_030 Hb_012022_050 Hb_012022_050 Hb_158163_010--Hb_012022_050 Hb_001953_080 Hb_001953_080 Hb_158163_010--Hb_001953_080 Hb_000136_100 Hb_000136_100 Hb_158163_010--Hb_000136_100 Hb_007383_020 Hb_007383_020 Hb_158163_010--Hb_007383_020 Hb_002154_110 Hb_002154_110 Hb_158163_010--Hb_002154_110 Hb_008642_030--Hb_002154_110 Hb_003103_010 Hb_003103_010 Hb_008642_030--Hb_003103_010 Hb_000563_200 Hb_000563_200 Hb_008642_030--Hb_000563_200 Hb_000016_170 Hb_000016_170 Hb_008642_030--Hb_000016_170 Hb_005167_030 Hb_005167_030 Hb_008642_030--Hb_005167_030 Hb_002477_010 Hb_002477_010 Hb_012022_050--Hb_002477_010 Hb_012022_050--Hb_007383_020 Hb_032920_070 Hb_032920_070 Hb_012022_050--Hb_032920_070 Hb_001946_310 Hb_001946_310 Hb_012022_050--Hb_001946_310 Hb_000297_120 Hb_000297_120 Hb_012022_050--Hb_000297_120 Hb_005648_010 Hb_005648_010 Hb_012022_050--Hb_005648_010 Hb_011249_020 Hb_011249_020 Hb_001953_080--Hb_011249_020 Hb_003020_260 Hb_003020_260 Hb_001953_080--Hb_003020_260 Hb_001307_030 Hb_001307_030 Hb_001953_080--Hb_001307_030 Hb_001953_080--Hb_000297_120 Hb_025098_010 Hb_025098_010 Hb_001953_080--Hb_025098_010 Hb_000649_140 Hb_000649_140 Hb_001953_080--Hb_000649_140 Hb_066842_010 Hb_066842_010 Hb_000136_100--Hb_066842_010 Hb_007894_010 Hb_007894_010 Hb_000136_100--Hb_007894_010 Hb_000060_050 Hb_000060_050 Hb_000136_100--Hb_000060_050 Hb_000258_240 Hb_000258_240 Hb_000136_100--Hb_000258_240 Hb_062537_010 Hb_062537_010 Hb_000136_100--Hb_062537_010 Hb_002150_040 Hb_002150_040 Hb_000136_100--Hb_002150_040 Hb_001318_050 Hb_001318_050 Hb_007383_020--Hb_001318_050 Hb_007383_020--Hb_005648_010 Hb_000025_190 Hb_000025_190 Hb_007383_020--Hb_000025_190 Hb_012678_020 Hb_012678_020 Hb_007383_020--Hb_012678_020 Hb_000800_090 Hb_000800_090 Hb_007383_020--Hb_000800_090 Hb_000115_150 Hb_000115_150 Hb_007383_020--Hb_000115_150 Hb_002154_110--Hb_003103_010 Hb_002154_110--Hb_000016_170 Hb_002154_110--Hb_000563_200 Hb_006573_290 Hb_006573_290 Hb_002154_110--Hb_006573_290 Hb_145880_020 Hb_145880_020 Hb_002154_110--Hb_145880_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.48397 2.27602 7.41564 39.1565 2.78247 17.9798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6164 24.892 17.8268 24.7293 23.8142

CAGE analysis