Hb_158203_010

Information

Type -
Description -
Location Contig158203: 458-1546
Sequence    

Annotation

kegg
ID sly:104646012
description uncharacterized LOC104646012
nr
ID XP_012068505.1
description PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID Q8RU68
description Putative 22 kDa kafirin cluster; Ty3-Gypsy type OS=Oryza sativa GN=OSJNBa0022D10.4 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158203_010 0.0 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
2 Hb_121041_010 0.0699049597 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
3 Hb_056095_010 0.1590833815 - - conserved hypothetical protein [Ricinus communis]
4 Hb_180367_010 0.1711337038 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
5 Hb_003567_020 0.1754568343 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004445_030 0.1806112996 - - conserved hypothetical protein [Ricinus communis]
7 Hb_054127_020 0.1849444617 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
8 Hb_003739_040 0.1889083015 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
9 Hb_004643_010 0.1930358157 - - cytochrome B, putative [Ricinus communis]
10 Hb_017415_010 0.1933614595 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
11 Hb_001508_010 0.1993408392 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006040_150 0.20828182 - - -
13 Hb_062192_020 0.2083332096 - - cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]
14 Hb_013420_040 0.2086748482 - - unnamed protein product [Vitis vinifera]
15 Hb_015076_020 0.2109783049 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
16 Hb_000405_010 0.2114800137 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
17 Hb_009355_010 0.2132048425 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Nelumbo nucifera]
18 Hb_156746_010 0.2143867081 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
19 Hb_006474_010 0.2152047373 - - hypothetical protein VITISV_032357 [Vitis vinifera]
20 Hb_013420_020 0.2168878835 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_158203_010 Hb_158203_010 Hb_121041_010 Hb_121041_010 Hb_158203_010--Hb_121041_010 Hb_056095_010 Hb_056095_010 Hb_158203_010--Hb_056095_010 Hb_180367_010 Hb_180367_010 Hb_158203_010--Hb_180367_010 Hb_003567_020 Hb_003567_020 Hb_158203_010--Hb_003567_020 Hb_004445_030 Hb_004445_030 Hb_158203_010--Hb_004445_030 Hb_054127_020 Hb_054127_020 Hb_158203_010--Hb_054127_020 Hb_003739_040 Hb_003739_040 Hb_121041_010--Hb_003739_040 Hb_121041_010--Hb_003567_020 Hb_121041_010--Hb_180367_010 Hb_121041_010--Hb_054127_020 Hb_006474_010 Hb_006474_010 Hb_121041_010--Hb_006474_010 Hb_061940_010 Hb_061940_010 Hb_056095_010--Hb_061940_010 Hb_152483_010 Hb_152483_010 Hb_056095_010--Hb_152483_010 Hb_000710_100 Hb_000710_100 Hb_056095_010--Hb_000710_100 Hb_041711_040 Hb_041711_040 Hb_056095_010--Hb_041711_040 Hb_010623_010 Hb_010623_010 Hb_056095_010--Hb_010623_010 Hb_180367_010--Hb_003567_020 Hb_180367_010--Hb_003739_040 Hb_017415_010 Hb_017415_010 Hb_180367_010--Hb_017415_010 Hb_003157_020 Hb_003157_020 Hb_180367_010--Hb_003157_020 Hb_002149_030 Hb_002149_030 Hb_180367_010--Hb_002149_030 Hb_164415_010 Hb_164415_010 Hb_180367_010--Hb_164415_010 Hb_003567_020--Hb_003739_040 Hb_003567_020--Hb_017415_010 Hb_003567_020--Hb_002149_030 Hb_004445_030--Hb_054127_020 Hb_047923_030 Hb_047923_030 Hb_004445_030--Hb_047923_030 Hb_002576_010 Hb_002576_010 Hb_004445_030--Hb_002576_010 Hb_004052_130 Hb_004052_130 Hb_004445_030--Hb_004052_130 Hb_009355_010 Hb_009355_010 Hb_004445_030--Hb_009355_010 Hb_144838_010 Hb_144838_010 Hb_004445_030--Hb_144838_010 Hb_006356_030 Hb_006356_030 Hb_054127_020--Hb_006356_030 Hb_000405_010 Hb_000405_010 Hb_054127_020--Hb_000405_010 Hb_000923_110 Hb_000923_110 Hb_054127_020--Hb_000923_110 Hb_054127_020--Hb_002576_010 Hb_054127_020--Hb_047923_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0215956 0.021652 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0156315 0.318673

CAGE analysis