Hb_158445_010

Information

Type -
Description -
Location Contig158445: 3447-11891
Sequence    

Annotation

kegg
ID rcu:RCOM_0365260
description Cysteine protease ATG4B, putative
nr
ID XP_012081889.1
description PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
swissprot
ID A2Q1V6
description Cysteine protease ATG4 OS=Medicago truncatula GN=ATG4 PE=3 SV=1
trembl
ID A0A067K070
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19245 PE=4 SV=1
Gene Ontology
ID GO:0005737
description cysteine protease atg4-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14023: 10393-10961 , PASA_asmbl_14024: 3487-11864 , PASA_asmbl_14025: 3433-11864 , PASA_asmbl_14026: 10248-10363 , PASA_asmbl_14028: 4363-4648
cDNA
(Sanger)
(ID:Location)		 017_G24.ab1: 3433-7722 , 049_I19.ab1: 3438-7284

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158445_010 0.0 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
2 Hb_000327_060 0.0452370723 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
3 Hb_004324_090 0.0605183904 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
4 Hb_005162_060 0.0679436611 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
5 Hb_004143_150 0.0689307195 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
6 Hb_000310_020 0.0719336216 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
7 Hb_163256_020 0.0757642108 - - fructokinase [Manihot esculenta]
8 Hb_006615_240 0.075850643 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
9 Hb_000336_150 0.0813257747 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
10 Hb_000733_180 0.0814947721 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
11 Hb_000221_190 0.0815138993 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
12 Hb_012107_060 0.0816589931 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
13 Hb_001545_160 0.0821344052 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC102615208 isoform X1 [Citrus sinensis]
14 Hb_000424_200 0.0824183221 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
15 Hb_012423_030 0.0841181005 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_009803_050 0.0856618829 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
17 Hb_000571_020 0.0868474617 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
18 Hb_010812_120 0.0883424562 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
19 Hb_000069_420 0.0884941061 - - Beclin-1, putative [Ricinus communis]
20 Hb_000107_160 0.0894164866 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]

Gene co-expression network

sample Hb_158445_010 Hb_158445_010 Hb_000327_060 Hb_000327_060 Hb_158445_010--Hb_000327_060 Hb_004324_090 Hb_004324_090 Hb_158445_010--Hb_004324_090 Hb_005162_060 Hb_005162_060 Hb_158445_010--Hb_005162_060 Hb_004143_150 Hb_004143_150 Hb_158445_010--Hb_004143_150 Hb_000310_020 Hb_000310_020 Hb_158445_010--Hb_000310_020 Hb_163256_020 Hb_163256_020 Hb_158445_010--Hb_163256_020 Hb_000327_060--Hb_004143_150 Hb_001545_160 Hb_001545_160 Hb_000327_060--Hb_001545_160 Hb_000327_060--Hb_005162_060 Hb_002676_090 Hb_002676_090 Hb_000327_060--Hb_002676_090 Hb_012423_030 Hb_012423_030 Hb_000327_060--Hb_012423_030 Hb_004324_090--Hb_000310_020 Hb_004324_090--Hb_163256_020 Hb_000069_420 Hb_000069_420 Hb_004324_090--Hb_000069_420 Hb_006615_240 Hb_006615_240 Hb_004324_090--Hb_006615_240 Hb_000856_010 Hb_000856_010 Hb_004324_090--Hb_000856_010 Hb_009803_050 Hb_009803_050 Hb_005162_060--Hb_009803_050 Hb_001514_120 Hb_001514_120 Hb_005162_060--Hb_001514_120 Hb_003038_240 Hb_003038_240 Hb_005162_060--Hb_003038_240 Hb_000424_200 Hb_000424_200 Hb_005162_060--Hb_000424_200 Hb_004899_370 Hb_004899_370 Hb_004143_150--Hb_004899_370 Hb_000001_060 Hb_000001_060 Hb_004143_150--Hb_000001_060 Hb_000920_110 Hb_000920_110 Hb_004143_150--Hb_000920_110 Hb_004127_020 Hb_004127_020 Hb_004143_150--Hb_004127_020 Hb_004143_150--Hb_006615_240 Hb_004102_110 Hb_004102_110 Hb_004143_150--Hb_004102_110 Hb_000505_130 Hb_000505_130 Hb_000310_020--Hb_000505_130 Hb_000221_190 Hb_000221_190 Hb_000310_020--Hb_000221_190 Hb_000161_130 Hb_000161_130 Hb_000310_020--Hb_000161_130 Hb_000310_020--Hb_006615_240 Hb_003124_150 Hb_003124_150 Hb_000310_020--Hb_003124_150 Hb_000465_300 Hb_000465_300 Hb_163256_020--Hb_000465_300 Hb_006256_030 Hb_006256_030 Hb_163256_020--Hb_006256_030 Hb_022318_020 Hb_022318_020 Hb_163256_020--Hb_022318_020 Hb_163256_020--Hb_000310_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7973 18.9566 17.6872 18.5233 12.4301 11.0848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.3426 44.1032 30.7139 15.215 19.8878

CAGE analysis