Hb_158575_010

Information

Type -
Description -
Location Contig158575: 378-9577
Sequence    

Annotation

kegg
ID rcu:RCOM_1318690
description hypothetical protein
nr
ID XP_002529264.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STE5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1318690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158575_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_157680_010 0.0005993523 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
3 Hb_004453_120 0.0034708308 - - ammonium transporter, putative [Ricinus communis]
4 Hb_003882_030 0.0215535032 - - putative retrotransposon protein [Phyllostachys edulis]
5 Hb_176140_010 0.0244675223 - - polyprotein [Oryza australiensis]
6 Hb_001779_050 0.0253905347 - - polyprotein [Ananas comosus]
7 Hb_002874_250 0.0263258265 - - -
8 Hb_000010_230 0.028086812 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
9 Hb_001338_010 0.0379129509 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
10 Hb_000031_070 0.0426622226 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
11 Hb_184398_010 0.0777773008 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
12 Hb_003477_020 0.0793873222 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
13 Hb_001681_010 0.0815302473 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
14 Hb_001081_070 0.0859118146 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
15 Hb_004138_020 0.0912339276 - - PREDICTED: cucumisin-like [Populus euphratica]
16 Hb_151061_040 0.095185977 - - putative retrotransposon protein [Phyllostachys edulis]
17 Hb_004466_080 0.1003626495 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
18 Hb_005087_020 0.1042397363 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
19 Hb_025654_010 0.1141044975 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
20 Hb_011540_050 0.1156009518 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_158575_010 Hb_158575_010 Hb_157680_010 Hb_157680_010 Hb_158575_010--Hb_157680_010 Hb_004453_120 Hb_004453_120 Hb_158575_010--Hb_004453_120 Hb_003882_030 Hb_003882_030 Hb_158575_010--Hb_003882_030 Hb_176140_010 Hb_176140_010 Hb_158575_010--Hb_176140_010 Hb_001779_050 Hb_001779_050 Hb_158575_010--Hb_001779_050 Hb_002874_250 Hb_002874_250 Hb_158575_010--Hb_002874_250 Hb_157680_010--Hb_004453_120 Hb_157680_010--Hb_003882_030 Hb_157680_010--Hb_176140_010 Hb_157680_010--Hb_002874_250 Hb_157680_010--Hb_001779_050 Hb_004453_120--Hb_003882_030 Hb_004453_120--Hb_002874_250 Hb_000010_230 Hb_000010_230 Hb_004453_120--Hb_000010_230 Hb_004453_120--Hb_176140_010 Hb_003882_030--Hb_002874_250 Hb_003882_030--Hb_000010_230 Hb_003882_030--Hb_176140_010 Hb_176140_010--Hb_001779_050 Hb_001338_010 Hb_001338_010 Hb_176140_010--Hb_001338_010 Hb_000031_070 Hb_000031_070 Hb_176140_010--Hb_000031_070 Hb_001779_050--Hb_001338_010 Hb_001779_050--Hb_000031_070 Hb_001779_050--Hb_004453_120 Hb_002874_250--Hb_000010_230 Hb_002874_250--Hb_176140_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0243067 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.294311

CAGE analysis