Hb_158597_010

Information

Type -
Description -
Location Contig158597: 4608-10240
Sequence    

Annotation

kegg
ID rcu:RCOM_0230740
description serine hydroxymethyltransferase, putative (EC:2.1.2.1)
nr
ID XP_012079535.1
description PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
swissprot
ID P50433
description Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067KK26
description Serine hydroxymethyltransferase OS=Jatropha curcas GN=JCGZ_12630 PE=3 SV=1
Gene Ontology
ID GO:0005634
description serine mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14043: 4702-9968 , PASA_asmbl_14044: 4702-9968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158597_010 0.0 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
2 Hb_000940_060 0.0372710034 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
3 Hb_000433_040 0.039196538 - - -
4 Hb_081344_010 0.0399531305 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
5 Hb_010666_020 0.0405040921 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
6 Hb_000152_300 0.046300044 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
7 Hb_004818_010 0.054329434 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
8 Hb_029584_020 0.0556249444 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000704_020 0.0558302448 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000243_190 0.0570873084 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
11 Hb_003093_050 0.0582621663 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
12 Hb_000029_150 0.061971872 - - conserved hypothetical protein [Ricinus communis]
13 Hb_127349_020 0.0641492981 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
14 Hb_010812_030 0.064277312 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000530_060 0.065550452 - - -
16 Hb_013405_240 0.0657474448 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
17 Hb_005483_050 0.0662142202 - - conserved hypothetical protein [Ricinus communis]
18 Hb_101097_010 0.0687290739 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_180094_010 0.0688578874 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
20 Hb_007416_250 0.0690210101 - - -

Gene co-expression network

sample Hb_158597_010 Hb_158597_010 Hb_000940_060 Hb_000940_060 Hb_158597_010--Hb_000940_060 Hb_000433_040 Hb_000433_040 Hb_158597_010--Hb_000433_040 Hb_081344_010 Hb_081344_010 Hb_158597_010--Hb_081344_010 Hb_010666_020 Hb_010666_020 Hb_158597_010--Hb_010666_020 Hb_000152_300 Hb_000152_300 Hb_158597_010--Hb_000152_300 Hb_004818_010 Hb_004818_010 Hb_158597_010--Hb_004818_010 Hb_000243_190 Hb_000243_190 Hb_000940_060--Hb_000243_190 Hb_000940_060--Hb_010666_020 Hb_000940_060--Hb_000433_040 Hb_000940_060--Hb_081344_010 Hb_005483_050 Hb_005483_050 Hb_000940_060--Hb_005483_050 Hb_000433_040--Hb_081344_010 Hb_000433_040--Hb_000152_300 Hb_000433_040--Hb_010666_020 Hb_029584_020 Hb_029584_020 Hb_000433_040--Hb_029584_020 Hb_127349_020 Hb_127349_020 Hb_000433_040--Hb_127349_020 Hb_180094_010 Hb_180094_010 Hb_000433_040--Hb_180094_010 Hb_081344_010--Hb_000152_300 Hb_081344_010--Hb_010666_020 Hb_081344_010--Hb_029584_020 Hb_081344_010--Hb_127349_020 Hb_010666_020--Hb_000152_300 Hb_010666_020--Hb_127349_020 Hb_010666_020--Hb_180094_010 Hb_000152_300--Hb_127349_020 Hb_000152_300--Hb_180094_010 Hb_000152_300--Hb_029584_020 Hb_003093_050 Hb_003093_050 Hb_004818_010--Hb_003093_050 Hb_000704_020 Hb_000704_020 Hb_004818_010--Hb_000704_020 Hb_004143_080 Hb_004143_080 Hb_004818_010--Hb_004143_080 Hb_004818_010--Hb_029584_020 Hb_000530_060 Hb_000530_060 Hb_004818_010--Hb_000530_060 Hb_000815_120 Hb_000815_120 Hb_004818_010--Hb_000815_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0658191 28.6905 22.8125 0 0.00863523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10291 0.0971699 0 0.0321911 132.627

CAGE analysis