Hb_158604_010

Information

Type -
Description -
Location Contig158604: 17159-29075
Sequence    

Annotation

kegg
ID tcc:TCM_001900
description Endoplasmic reticulum vesicle transporter protein isoform 1
nr
ID XP_012081271.1
description PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
swissprot
ID Q66KH2
description Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1
trembl
ID A0A067KE42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18119 PE=4 SV=1
Gene Ontology
ID GO:0005783
description endoplasmic reticulum-golgi intermediate compartment protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14049: 17302-17852 , PASA_asmbl_14050: 18124-29543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158604_010 0.0 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
2 Hb_032920_130 0.0785495422 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
3 Hb_105641_010 0.0787471196 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
4 Hb_000115_160 0.0865980551 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
5 Hb_000483_380 0.0892196924 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
6 Hb_008112_030 0.091538196 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007380_140 0.0917693148 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
8 Hb_034432_030 0.0921131809 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
9 Hb_001021_200 0.0924561958 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
10 Hb_003040_020 0.0925263597 - - PREDICTED: protein cereblon [Jatropha curcas]
11 Hb_000343_110 0.0932528975 - - Heat shock 70 kDa protein, putative [Ricinus communis]
12 Hb_011618_080 0.0939856523 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
13 Hb_000960_050 0.0961872709 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
14 Hb_000174_060 0.0962563028 - - zinc finger family protein [Populus trichocarpa]
15 Hb_001307_080 0.0968418137 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
16 Hb_067193_010 0.0983702129 - - -
17 Hb_028872_170 0.0990932226 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001140_030 0.0992409997 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
19 Hb_000028_510 0.0993397757 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
20 Hb_002686_040 0.0994449759 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]

Gene co-expression network

sample Hb_158604_010 Hb_158604_010 Hb_032920_130 Hb_032920_130 Hb_158604_010--Hb_032920_130 Hb_105641_010 Hb_105641_010 Hb_158604_010--Hb_105641_010 Hb_000115_160 Hb_000115_160 Hb_158604_010--Hb_000115_160 Hb_000483_380 Hb_000483_380 Hb_158604_010--Hb_000483_380 Hb_008112_030 Hb_008112_030 Hb_158604_010--Hb_008112_030 Hb_007380_140 Hb_007380_140 Hb_158604_010--Hb_007380_140 Hb_010417_060 Hb_010417_060 Hb_032920_130--Hb_010417_060 Hb_000261_030 Hb_000261_030 Hb_032920_130--Hb_000261_030 Hb_002044_170 Hb_002044_170 Hb_032920_130--Hb_002044_170 Hb_000035_410 Hb_000035_410 Hb_032920_130--Hb_000035_410 Hb_006787_060 Hb_006787_060 Hb_032920_130--Hb_006787_060 Hb_001235_230 Hb_001235_230 Hb_032920_130--Hb_001235_230 Hb_007929_080 Hb_007929_080 Hb_105641_010--Hb_007929_080 Hb_001021_200 Hb_001021_200 Hb_105641_010--Hb_001021_200 Hb_003929_140 Hb_003929_140 Hb_105641_010--Hb_003929_140 Hb_000028_510 Hb_000028_510 Hb_105641_010--Hb_000028_510 Hb_143766_110 Hb_143766_110 Hb_105641_010--Hb_143766_110 Hb_028872_170 Hb_028872_170 Hb_000115_160--Hb_028872_170 Hb_146224_010 Hb_146224_010 Hb_000115_160--Hb_146224_010 Hb_000101_350 Hb_000101_350 Hb_000115_160--Hb_000101_350 Hb_002260_050 Hb_002260_050 Hb_000115_160--Hb_002260_050 Hb_001440_040 Hb_001440_040 Hb_000115_160--Hb_001440_040 Hb_003040_020 Hb_003040_020 Hb_000483_380--Hb_003040_020 Hb_033312_150 Hb_033312_150 Hb_000483_380--Hb_033312_150 Hb_013749_020 Hb_013749_020 Hb_000483_380--Hb_013749_020 Hb_000116_060 Hb_000116_060 Hb_000483_380--Hb_000116_060 Hb_000544_060 Hb_000544_060 Hb_000483_380--Hb_000544_060 Hb_002174_020 Hb_002174_020 Hb_008112_030--Hb_002174_020 Hb_007635_030 Hb_007635_030 Hb_008112_030--Hb_007635_030 Hb_000960_050 Hb_000960_050 Hb_008112_030--Hb_000960_050 Hb_004453_110 Hb_004453_110 Hb_008112_030--Hb_004453_110 Hb_005731_090 Hb_005731_090 Hb_008112_030--Hb_005731_090 Hb_006252_020 Hb_006252_020 Hb_008112_030--Hb_006252_020 Hb_142218_020 Hb_142218_020 Hb_007380_140--Hb_142218_020 Hb_002686_040 Hb_002686_040 Hb_007380_140--Hb_002686_040 Hb_005723_020 Hb_005723_020 Hb_007380_140--Hb_005723_020 Hb_010272_010 Hb_010272_010 Hb_007380_140--Hb_010272_010 Hb_005946_210 Hb_005946_210 Hb_007380_140--Hb_005946_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4989 26.2038 20.6953 18.3133 41.1488 22.6663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.24788 8.92246 18.1133 19.1853 15.1681

CAGE analysis