Hb_158845_020

Information

Type transcription factor
Description TF Family: TUB
Location Contig158845: 11557-13994
Sequence    

Annotation

kegg
ID pop:POPTR_0001s03290g
description POPTRDRAFT_843435; hypothetical protein
nr
ID XP_012067458.1
description PREDICTED: tubby-like protein 8 [Jatropha curcas]
swissprot
ID Q9S9M8
description Tubby-like protein 8 OS=Arabidopsis thaliana GN=TULP8 PE=2 SV=1
trembl
ID A0A067LCW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26957 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158845_020 0.0 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
2 Hb_000071_080 0.0041695153 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
3 Hb_003247_050 0.0046517346 - - -
4 Hb_007524_090 0.0076551347 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_105767_020 0.0098993315 - - -
6 Hb_103586_010 0.0186900284 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Glycine max]
7 Hb_152598_010 0.0211523722 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
8 Hb_000230_350 0.0388820102 - - PREDICTED: uncharacterized protein LOC105630371 [Jatropha curcas]
9 Hb_000816_070 0.0423739285 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001249_040 0.0602763746 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
11 Hb_005062_090 0.0726047677 - - ferredoxin [Vibrio natriegens]
12 Hb_004028_010 0.0744049405 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_000212_200 0.0756341618 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
14 Hb_001581_030 0.0758454961 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
15 Hb_027468_010 0.0761338481 - - kinase, putative [Ricinus communis]
16 Hb_021943_010 0.0785923171 - - -
17 Hb_004017_020 0.0799184929 - - Squalene monooxygenase, putative [Ricinus communis]
18 Hb_003848_050 0.0805635357 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
19 Hb_158467_020 0.0827218452 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
20 Hb_002415_010 0.0831987997 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]

Gene co-expression network

sample Hb_158845_020 Hb_158845_020 Hb_000071_080 Hb_000071_080 Hb_158845_020--Hb_000071_080 Hb_003247_050 Hb_003247_050 Hb_158845_020--Hb_003247_050 Hb_007524_090 Hb_007524_090 Hb_158845_020--Hb_007524_090 Hb_105767_020 Hb_105767_020 Hb_158845_020--Hb_105767_020 Hb_103586_010 Hb_103586_010 Hb_158845_020--Hb_103586_010 Hb_152598_010 Hb_152598_010 Hb_158845_020--Hb_152598_010 Hb_000071_080--Hb_003247_050 Hb_000071_080--Hb_007524_090 Hb_000071_080--Hb_105767_020 Hb_000071_080--Hb_103586_010 Hb_000071_080--Hb_152598_010 Hb_003247_050--Hb_007524_090 Hb_003247_050--Hb_105767_020 Hb_003247_050--Hb_103586_010 Hb_003247_050--Hb_152598_010 Hb_007524_090--Hb_105767_020 Hb_007524_090--Hb_103586_010 Hb_007524_090--Hb_152598_010 Hb_105767_020--Hb_103586_010 Hb_000230_350 Hb_000230_350 Hb_105767_020--Hb_000230_350 Hb_103586_010--Hb_152598_010 Hb_000816_070 Hb_000816_070 Hb_103586_010--Hb_000816_070 Hb_152598_010--Hb_000816_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0670559 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0205024 0

CAGE analysis