Hb_158990_010

Information

Type -
Description -
Location Contig158990: 37-1096
Sequence    

Annotation

kegg
ID vvi:104877935
description uncharacterized LOC104877935
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158990_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_001178_120 0.0894556812 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
3 Hb_000094_390 0.1616642301 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
4 Hb_000153_020 0.1852786295 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000153_040 0.2037526546 - - -
6 Hb_000395_100 0.208124997 - - Protein MYG1, putative [Ricinus communis]
7 Hb_009693_040 0.2160692561 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Brassica rapa]
8 Hb_007963_050 0.2160717169 - - -
9 Hb_003607_030 0.2164704171 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
10 Hb_005539_320 0.222792647 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
11 Hb_000953_150 0.226269026 - - -
12 Hb_000098_280 0.2282778208 - - PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Jatropha curcas]
13 Hb_132629_010 0.2327267053 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
14 Hb_080765_020 0.2331128251 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
15 Hb_046727_010 0.2342947111 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_177627_010 0.2399026767 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_000926_220 0.2411965605 - - -
18 Hb_000905_070 0.2424133263 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
19 Hb_007008_020 0.2426674761 - - -
20 Hb_003494_260 0.2437802809 - - -

Gene co-expression network

sample Hb_158990_010 Hb_158990_010 Hb_001178_120 Hb_001178_120 Hb_158990_010--Hb_001178_120 Hb_000094_390 Hb_000094_390 Hb_158990_010--Hb_000094_390 Hb_000153_020 Hb_000153_020 Hb_158990_010--Hb_000153_020 Hb_000153_040 Hb_000153_040 Hb_158990_010--Hb_000153_040 Hb_000395_100 Hb_000395_100 Hb_158990_010--Hb_000395_100 Hb_009693_040 Hb_009693_040 Hb_158990_010--Hb_009693_040 Hb_001178_120--Hb_000153_020 Hb_001178_120--Hb_000094_390 Hb_005539_320 Hb_005539_320 Hb_001178_120--Hb_005539_320 Hb_177627_010 Hb_177627_010 Hb_001178_120--Hb_177627_010 Hb_132629_010 Hb_132629_010 Hb_001178_120--Hb_132629_010 Hb_000094_390--Hb_000153_020 Hb_001892_160 Hb_001892_160 Hb_000094_390--Hb_001892_160 Hb_000094_390--Hb_005539_320 Hb_000094_390--Hb_177627_010 Hb_000153_020--Hb_177627_010 Hb_000153_020--Hb_132629_010 Hb_000007_310 Hb_000007_310 Hb_000153_020--Hb_000007_310 Hb_000153_020--Hb_005539_320 Hb_075570_010 Hb_075570_010 Hb_000153_020--Hb_075570_010 Hb_003494_260 Hb_003494_260 Hb_000153_040--Hb_003494_260 Hb_000345_480 Hb_000345_480 Hb_000153_040--Hb_000345_480 Hb_000153_040--Hb_132629_010 Hb_000153_040--Hb_075570_010 Hb_013983_010 Hb_013983_010 Hb_000153_040--Hb_013983_010 Hb_000153_040--Hb_000007_310 Hb_000395_100--Hb_001178_120 Hb_004466_010 Hb_004466_010 Hb_000395_100--Hb_004466_010 Hb_000395_100--Hb_000094_390 Hb_011639_070 Hb_011639_070 Hb_000395_100--Hb_011639_070 Hb_019654_120 Hb_019654_120 Hb_000395_100--Hb_019654_120 Hb_007963_050 Hb_007963_050 Hb_009693_040--Hb_007963_050 Hb_003607_030 Hb_003607_030 Hb_009693_040--Hb_003607_030 Hb_000953_150 Hb_000953_150 Hb_009693_040--Hb_000953_150 Hb_000098_280 Hb_000098_280 Hb_009693_040--Hb_000098_280 Hb_080765_020 Hb_080765_020 Hb_009693_040--Hb_080765_020 Hb_046727_010 Hb_046727_010 Hb_009693_040--Hb_046727_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.133908 0 0 0 0.0642287 0.0196611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis