Hb_159124_010

Information

Type -
Description -
Location Contig159124: 1623-3687
Sequence    

Annotation

kegg
ID pmum:103332224
description uncharacterized LOC103332224
nr
ID XP_008233166.1
description PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
swissprot
ID Q6XKE6
description Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1
trembl
ID C5YEQ6
description Putative uncharacterized protein Sb06g013680 OS=Sorghum bicolor GN=Sb06g013680 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC103332224

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159124_010 0.0 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
2 Hb_181013_010 0.0240054433 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
3 Hb_005432_020 0.0244855007 - - -
4 Hb_000142_090 0.0248709489 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
5 Hb_101034_010 0.026418409 - - -
6 Hb_134377_070 0.0286815227 - - -
7 Hb_006120_160 0.0301244382 - - -
8 Hb_000975_060 0.0561539839 - - -
9 Hb_179183_010 0.072106636 - - RALF-LIKE 32 family protein [Populus trichocarpa]
10 Hb_000248_020 0.0727363717 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
11 Hb_099878_040 0.0727853595 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
12 Hb_047923_030 0.0741653355 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
13 Hb_056506_080 0.0741675531 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
14 Hb_094694_010 0.0762787345 - - -
15 Hb_002576_010 0.0839705654 - - -
16 Hb_039547_010 0.0938641212 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
17 Hb_000916_010 0.0945112542 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
18 Hb_008755_020 0.1093984544 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000209_010 0.1204803799 - - -
20 Hb_001174_050 0.123772155 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_159124_010 Hb_159124_010 Hb_181013_010 Hb_181013_010 Hb_159124_010--Hb_181013_010 Hb_005432_020 Hb_005432_020 Hb_159124_010--Hb_005432_020 Hb_000142_090 Hb_000142_090 Hb_159124_010--Hb_000142_090 Hb_101034_010 Hb_101034_010 Hb_159124_010--Hb_101034_010 Hb_134377_070 Hb_134377_070 Hb_159124_010--Hb_134377_070 Hb_006120_160 Hb_006120_160 Hb_159124_010--Hb_006120_160 Hb_181013_010--Hb_000142_090 Hb_181013_010--Hb_005432_020 Hb_181013_010--Hb_101034_010 Hb_181013_010--Hb_134377_070 Hb_181013_010--Hb_006120_160 Hb_005432_020--Hb_101034_010 Hb_005432_020--Hb_000142_090 Hb_005432_020--Hb_006120_160 Hb_005432_020--Hb_134377_070 Hb_000142_090--Hb_134377_070 Hb_000142_090--Hb_101034_010 Hb_000142_090--Hb_006120_160 Hb_101034_010--Hb_006120_160 Hb_101034_010--Hb_134377_070 Hb_134377_070--Hb_006120_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0098283 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00704892 0.0374471

CAGE analysis