Hb_159198_010

Information

Type -
Description -
Location Contig159198: 1937-5826
Sequence    

Annotation

kegg
ID tcc:TCM_004065
description hypothetical protein
nr
ID CAN63433.1
description hypothetical protein VITISV_033829 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BFD6
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033829 PE=4 SV=1
Gene Ontology
ID GO:0016020
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159198_010 0.0 - - hypothetical protein VITISV_033829 [Vitis vinifera]
2 Hb_000840_040 0.201864134 - - monoxygenase, putative [Ricinus communis]
3 Hb_149515_010 0.2023823282 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
4 Hb_003517_010 0.2071227667 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
5 Hb_000067_030 0.2288341003 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
6 Hb_000141_010 0.2420896083 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
7 Hb_002740_170 0.2421140152 - - PREDICTED: uncharacterized protein LOC105647357 [Jatropha curcas]
8 Hb_011663_020 0.2471133691 - - Putative retrotransposon protein, identical [Solanum demissum]
9 Hb_005896_010 0.2484409684 - - -
10 Hb_006096_020 0.2496230959 - - Os06g0343500 [Oryza sativa Japonica Group]
11 Hb_000649_180 0.2502933963 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
12 Hb_008145_010 0.2533543238 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
13 Hb_002656_010 0.2549463234 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
14 Hb_000177_120 0.2550387355 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
15 Hb_002291_020 0.2552857452 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000349_160 0.2602657101 - - PREDICTED: geraniol 8-hydroxylase-like [Citrus sinensis]
17 Hb_000816_020 0.2604618559 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
18 Hb_000453_130 0.261713152 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
19 Hb_004965_060 0.2624963307 - - PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Jatropha curcas]
20 Hb_007919_040 0.2637514618 - - PREDICTED: protein LYK5 [Jatropha curcas]

Gene co-expression network

sample Hb_159198_010 Hb_159198_010 Hb_000840_040 Hb_000840_040 Hb_159198_010--Hb_000840_040 Hb_149515_010 Hb_149515_010 Hb_159198_010--Hb_149515_010 Hb_003517_010 Hb_003517_010 Hb_159198_010--Hb_003517_010 Hb_000067_030 Hb_000067_030 Hb_159198_010--Hb_000067_030 Hb_000141_010 Hb_000141_010 Hb_159198_010--Hb_000141_010 Hb_002740_170 Hb_002740_170 Hb_159198_010--Hb_002740_170 Hb_003185_100 Hb_003185_100 Hb_000840_040--Hb_003185_100 Hb_000840_040--Hb_149515_010 Hb_000840_040--Hb_000141_010 Hb_002043_010 Hb_002043_010 Hb_000840_040--Hb_002043_010 Hb_001485_010 Hb_001485_010 Hb_000840_040--Hb_001485_010 Hb_008145_010 Hb_008145_010 Hb_149515_010--Hb_008145_010 Hb_011909_010 Hb_011909_010 Hb_149515_010--Hb_011909_010 Hb_000649_180 Hb_000649_180 Hb_149515_010--Hb_000649_180 Hb_002291_020 Hb_002291_020 Hb_149515_010--Hb_002291_020 Hb_007919_040 Hb_007919_040 Hb_149515_010--Hb_007919_040 Hb_149515_010--Hb_000141_010 Hb_008749_090 Hb_008749_090 Hb_003517_010--Hb_008749_090 Hb_003517_010--Hb_149515_010 Hb_005389_190 Hb_005389_190 Hb_003517_010--Hb_005389_190 Hb_000816_020 Hb_000816_020 Hb_003517_010--Hb_000816_020 Hb_006096_020 Hb_006096_020 Hb_003517_010--Hb_006096_020 Hb_029904_010 Hb_029904_010 Hb_003517_010--Hb_029904_010 Hb_003106_210 Hb_003106_210 Hb_000067_030--Hb_003106_210 Hb_003142_090 Hb_003142_090 Hb_000067_030--Hb_003142_090 Hb_001365_050 Hb_001365_050 Hb_000067_030--Hb_001365_050 Hb_006501_170 Hb_006501_170 Hb_000067_030--Hb_006501_170 Hb_006718_040 Hb_006718_040 Hb_000067_030--Hb_006718_040 Hb_001140_320 Hb_001140_320 Hb_000067_030--Hb_001140_320 Hb_000527_070 Hb_000527_070 Hb_000141_010--Hb_000527_070 Hb_002218_070 Hb_002218_070 Hb_000141_010--Hb_002218_070 Hb_001410_010 Hb_001410_010 Hb_000141_010--Hb_001410_010 Hb_082683_010 Hb_082683_010 Hb_000141_010--Hb_082683_010 Hb_000141_010--Hb_002291_020 Hb_001091_020 Hb_001091_020 Hb_000141_010--Hb_001091_020 Hb_003878_100 Hb_003878_100 Hb_002740_170--Hb_003878_100 Hb_040963_010 Hb_040963_010 Hb_002740_170--Hb_040963_010 Hb_005618_110 Hb_005618_110 Hb_002740_170--Hb_005618_110 Hb_000254_150 Hb_000254_150 Hb_002740_170--Hb_000254_150 Hb_148121_030 Hb_148121_030 Hb_002740_170--Hb_148121_030 Hb_001675_130 Hb_001675_130 Hb_002740_170--Hb_001675_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00861145 0.126086 0.0263059 0.00484182 0 0.00648734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0248406 0.0474523 0.202073 0.105839

CAGE analysis