Hb_159307_010

Information

Type -
Description -
Location Contig159307: 640-765
Sequence    

Annotation

kegg
ID rcu:RCOM_0574620
description isoleucyl tRNA synthetase, putative (EC:6.1.1.5)
nr
ID XP_012075814.1
description PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
swissprot
ID P41252
description Isoleucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=IARS PE=1 SV=2
trembl
ID A0A067KSI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10564 PE=3 SV=1
Gene Ontology
ID GO:0005829
description probable isoleucine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159307_010 0.0 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
2 Hb_116638_010 0.1595799304 - - conserved hypothetical protein [Ricinus communis]
3 Hb_130134_030 0.1778719287 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
4 Hb_003376_070 0.1888045698 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
5 Hb_001158_180 0.1917014576 - - -
6 Hb_000307_250 0.1955497938 - - PREDICTED: probable nucleoredoxin 2 [Jatropha curcas]
7 Hb_018118_020 0.1970386079 - - unnamed protein product [Vitis vinifera]
8 Hb_130134_020 0.1978253032 - - -
9 Hb_002783_010 0.208108895 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
10 Hb_003157_030 0.2103732665 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
11 Hb_030328_010 0.2136186763 - - hypothetical protein CICLE_v10015936mg [Citrus clementina]
12 Hb_003492_010 0.2151594697 - - DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
13 Hb_015354_010 0.2165260693 - - PREDICTED: B2 protein [Jatropha curcas]
14 Hb_118720_010 0.2202479869 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
15 Hb_006723_020 0.2210060416 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
16 Hb_000441_160 0.2214223026 - - ARF GTPase activator, putative [Ricinus communis]
17 Hb_169329_010 0.2260523548 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
18 Hb_007680_020 0.2269462632 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
19 Hb_171788_010 0.2294111924 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
20 Hb_000100_130 0.2301786023 - - hypothetical protein VITISV_026702 [Vitis vinifera]

Gene co-expression network

sample Hb_159307_010 Hb_159307_010 Hb_116638_010 Hb_116638_010 Hb_159307_010--Hb_116638_010 Hb_130134_030 Hb_130134_030 Hb_159307_010--Hb_130134_030 Hb_003376_070 Hb_003376_070 Hb_159307_010--Hb_003376_070 Hb_001158_180 Hb_001158_180 Hb_159307_010--Hb_001158_180 Hb_000307_250 Hb_000307_250 Hb_159307_010--Hb_000307_250 Hb_018118_020 Hb_018118_020 Hb_159307_010--Hb_018118_020 Hb_015354_010 Hb_015354_010 Hb_116638_010--Hb_015354_010 Hb_116638_010--Hb_003376_070 Hb_001052_040 Hb_001052_040 Hb_116638_010--Hb_001052_040 Hb_118720_010 Hb_118720_010 Hb_116638_010--Hb_118720_010 Hb_002742_080 Hb_002742_080 Hb_116638_010--Hb_002742_080 Hb_130134_020 Hb_130134_020 Hb_130134_030--Hb_130134_020 Hb_178041_010 Hb_178041_010 Hb_130134_030--Hb_178041_010 Hb_088428_010 Hb_088428_010 Hb_130134_030--Hb_088428_010 Hb_130134_030--Hb_003376_070 Hb_121467_010 Hb_121467_010 Hb_130134_030--Hb_121467_010 Hb_077211_010 Hb_077211_010 Hb_130134_030--Hb_077211_010 Hb_003157_030 Hb_003157_030 Hb_003376_070--Hb_003157_030 Hb_003492_010 Hb_003492_010 Hb_003376_070--Hb_003492_010 Hb_002411_130 Hb_002411_130 Hb_003376_070--Hb_002411_130 Hb_009119_030 Hb_009119_030 Hb_003376_070--Hb_009119_030 Hb_002742_070 Hb_002742_070 Hb_003376_070--Hb_002742_070 Hb_001158_180--Hb_000307_250 Hb_001247_140 Hb_001247_140 Hb_001158_180--Hb_001247_140 Hb_089435_010 Hb_089435_010 Hb_001158_180--Hb_089435_010 Hb_007348_030 Hb_007348_030 Hb_001158_180--Hb_007348_030 Hb_000441_160 Hb_000441_160 Hb_001158_180--Hb_000441_160 Hb_007680_020 Hb_007680_020 Hb_001158_180--Hb_007680_020 Hb_000307_250--Hb_007348_030 Hb_000307_250--Hb_007680_020 Hb_000307_250--Hb_000441_160 Hb_000244_240 Hb_000244_240 Hb_000307_250--Hb_000244_240 Hb_002986_050 Hb_002986_050 Hb_000307_250--Hb_002986_050 Hb_002737_020 Hb_002737_020 Hb_018118_020--Hb_002737_020 Hb_002370_040 Hb_002370_040 Hb_018118_020--Hb_002370_040 Hb_005715_020 Hb_005715_020 Hb_018118_020--Hb_005715_020 Hb_018118_020--Hb_116638_010 Hb_084470_010 Hb_084470_010 Hb_018118_020--Hb_084470_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3233 3465.19 1005.78 1659.17 1552.48 8767.65
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
335.63 302.128 764.513 166.753 177.459

CAGE analysis