Hb_159308_020

Information

Type -
Description -
Location Contig159308: 1856-5801
Sequence    

Annotation

kegg
ID mtr:MTR_069s1001
description Cell wall-associated hydrolase
nr
ID KJB12624.1
description hypothetical protein B456_002G027900 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2PZW7
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G027900 PE=4 SV=1
Gene Ontology
ID GO:0005739
description cell wall-associated partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14138: 2590-2795 , PASA_asmbl_14139: 2796-3113
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159308_020 0.0 - - hypothetical protein B456_002G027900 [Gossypium raimondii]
2 Hb_001221_240 0.1491188658 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000975_170 0.1607815985 - - PREDICTED: UDP-glucuronic acid decarboxylase 6 isoform X1 [Jatropha curcas]
4 Hb_182424_020 0.1802081381 - - hypothetical protein POPTR_0006s24190g [Populus trichocarpa]
5 Hb_000035_020 0.1830358818 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
6 Hb_005092_070 0.1886477154 - - Oligopeptide transporter, putative [Ricinus communis]
7 Hb_025161_030 0.189365316 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
8 Hb_000414_180 0.1910882887 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
9 Hb_031330_020 0.1959817531 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
10 Hb_102761_010 0.1978921056 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
11 Hb_000300_680 0.1980204601 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
12 Hb_001213_110 0.200058878 - - SOUL heme-binding family protein [Populus trichocarpa]
13 Hb_004530_010 0.2006774573 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
14 Hb_006483_120 0.2017100831 - - DNA binding protein, putative [Ricinus communis]
15 Hb_002400_300 0.2027173848 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
16 Hb_005154_090 0.2094290806 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_000415_080 0.2113154217 - - -
18 Hb_000705_270 0.2129460798 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
19 Hb_010721_040 0.2172305457 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]
20 Hb_000616_030 0.2183961581 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]

Gene co-expression network

sample Hb_159308_020 Hb_159308_020 Hb_001221_240 Hb_001221_240 Hb_159308_020--Hb_001221_240 Hb_000975_170 Hb_000975_170 Hb_159308_020--Hb_000975_170 Hb_182424_020 Hb_182424_020 Hb_159308_020--Hb_182424_020 Hb_000035_020 Hb_000035_020 Hb_159308_020--Hb_000035_020 Hb_005092_070 Hb_005092_070 Hb_159308_020--Hb_005092_070 Hb_025161_030 Hb_025161_030 Hb_159308_020--Hb_025161_030 Hb_042463_010 Hb_042463_010 Hb_001221_240--Hb_042463_010 Hb_000552_010 Hb_000552_010 Hb_001221_240--Hb_000552_010 Hb_001221_240--Hb_000975_170 Hb_002400_300 Hb_002400_300 Hb_001221_240--Hb_002400_300 Hb_001832_170 Hb_001832_170 Hb_001221_240--Hb_001832_170 Hb_000975_170--Hb_002400_300 Hb_000975_170--Hb_182424_020 Hb_000309_070 Hb_000309_070 Hb_000975_170--Hb_000309_070 Hb_114917_010 Hb_114917_010 Hb_000975_170--Hb_114917_010 Hb_031330_020 Hb_031330_020 Hb_000975_170--Hb_031330_020 Hb_181463_020 Hb_181463_020 Hb_182424_020--Hb_181463_020 Hb_000230_170 Hb_000230_170 Hb_182424_020--Hb_000230_170 Hb_046117_030 Hb_046117_030 Hb_182424_020--Hb_046117_030 Hb_182424_020--Hb_031330_020 Hb_082550_010 Hb_082550_010 Hb_182424_020--Hb_082550_010 Hb_134813_010 Hb_134813_010 Hb_000035_020--Hb_134813_010 Hb_021313_010 Hb_021313_010 Hb_000035_020--Hb_021313_010 Hb_000035_020--Hb_031330_020 Hb_000683_080 Hb_000683_080 Hb_000035_020--Hb_000683_080 Hb_000300_680 Hb_000300_680 Hb_000035_020--Hb_000300_680 Hb_011053_020 Hb_011053_020 Hb_000035_020--Hb_011053_020 Hb_000415_080 Hb_000415_080 Hb_005092_070--Hb_000415_080 Hb_002620_040 Hb_002620_040 Hb_005092_070--Hb_002620_040 Hb_003253_030 Hb_003253_030 Hb_005092_070--Hb_003253_030 Hb_040245_010 Hb_040245_010 Hb_005092_070--Hb_040245_010 Hb_002081_140 Hb_002081_140 Hb_005092_070--Hb_002081_140 Hb_000997_370 Hb_000997_370 Hb_005092_070--Hb_000997_370 Hb_094484_010 Hb_094484_010 Hb_025161_030--Hb_094484_010 Hb_010721_040 Hb_010721_040 Hb_025161_030--Hb_010721_040 Hb_128750_010 Hb_128750_010 Hb_025161_030--Hb_128750_010 Hb_102761_010 Hb_102761_010 Hb_025161_030--Hb_102761_010 Hb_004530_010 Hb_004530_010 Hb_025161_030--Hb_004530_010 Hb_025161_030--Hb_000415_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.393466 0.712722 4.95231 0.0523337 0.489183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.207825 0.163476 0.789857 2.41084 13.3823

CAGE analysis