Hb_159558_010

Information

Type -
Description -
Location Contig159558: 13862-17355
Sequence    

Annotation

kegg
ID rcu:RCOM_0225930
description Splicing factor, arginine/serine-rich, putative
nr
ID XP_012074361.1
description PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
swissprot
ID Q8VYA5
description Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana GN=RS2Z33 PE=1 SV=1
trembl
ID A0A067KJ41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08791 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine arginine-rich splicing factor 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14191: 16127-17249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159558_010 0.0 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
2 Hb_000614_210 0.0470527786 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
3 Hb_005542_140 0.0509980571 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
4 Hb_001814_030 0.0526037068 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
5 Hb_000174_060 0.0571878454 - - zinc finger family protein [Populus trichocarpa]
6 Hb_003206_130 0.0584472644 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
7 Hb_009615_170 0.0596260678 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
8 Hb_000170_150 0.0597227486 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
9 Hb_000412_010 0.0603024119 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_031042_050 0.0609713469 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
11 Hb_012395_140 0.0615376056 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
12 Hb_002205_250 0.0623479339 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
13 Hb_001550_060 0.0627802756 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
14 Hb_005402_040 0.0628283636 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
15 Hb_011849_040 0.0636290393 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_003943_010 0.0637879275 - - conserved hypothetical protein [Ricinus communis]
17 Hb_023226_080 0.0649870761 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
18 Hb_004182_050 0.0662502872 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
19 Hb_011202_020 0.0667252996 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
20 Hb_000069_470 0.0667546233 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_159558_010 Hb_159558_010 Hb_000614_210 Hb_000614_210 Hb_159558_010--Hb_000614_210 Hb_005542_140 Hb_005542_140 Hb_159558_010--Hb_005542_140 Hb_001814_030 Hb_001814_030 Hb_159558_010--Hb_001814_030 Hb_000174_060 Hb_000174_060 Hb_159558_010--Hb_000174_060 Hb_003206_130 Hb_003206_130 Hb_159558_010--Hb_003206_130 Hb_009615_170 Hb_009615_170 Hb_159558_010--Hb_009615_170 Hb_002205_250 Hb_002205_250 Hb_000614_210--Hb_002205_250 Hb_003835_070 Hb_003835_070 Hb_000614_210--Hb_003835_070 Hb_000614_210--Hb_001814_030 Hb_162275_050 Hb_162275_050 Hb_000614_210--Hb_162275_050 Hb_105105_010 Hb_105105_010 Hb_000614_210--Hb_105105_010 Hb_023226_080 Hb_023226_080 Hb_005542_140--Hb_023226_080 Hb_007426_060 Hb_007426_060 Hb_005542_140--Hb_007426_060 Hb_000862_040 Hb_000862_040 Hb_005542_140--Hb_000862_040 Hb_005568_040 Hb_005568_040 Hb_005542_140--Hb_005568_040 Hb_001668_010 Hb_001668_010 Hb_005542_140--Hb_001668_010 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_001814_030--Hb_002205_250 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_020378_030 Hb_020378_030 Hb_001814_030--Hb_020378_030 Hb_004129_070 Hb_004129_070 Hb_000174_060--Hb_004129_070 Hb_140049_040 Hb_140049_040 Hb_000174_060--Hb_140049_040 Hb_000243_210 Hb_000243_210 Hb_000174_060--Hb_000243_210 Hb_001767_140 Hb_001767_140 Hb_000174_060--Hb_001767_140 Hb_000174_060--Hb_009615_170 Hb_001550_060 Hb_001550_060 Hb_003206_130--Hb_001550_060 Hb_003470_080 Hb_003470_080 Hb_003206_130--Hb_003470_080 Hb_000441_120 Hb_000441_120 Hb_003206_130--Hb_000441_120 Hb_006420_040 Hb_006420_040 Hb_003206_130--Hb_006420_040 Hb_003206_130--Hb_000614_210 Hb_001821_090 Hb_001821_090 Hb_009615_170--Hb_001821_090 Hb_009615_170--Hb_012395_140 Hb_004884_150 Hb_004884_150 Hb_009615_170--Hb_004884_150 Hb_000579_230 Hb_000579_230 Hb_009615_170--Hb_000579_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.5567 16.1673 8.08368 10.3312 11.7494 12.5448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.96981 7.58301 8.26398 12.8035 11.3772

CAGE analysis