Hb_159558_030

Information

Type -
Description -
Location Contig159558: 27895-31983
Sequence    

Annotation

kegg
ID tcc:TCM_022842
description Ubiquitin E2 variant 1D-4
nr
ID NP_001294894.1
description ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
swissprot
ID Q9SVD7
description Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana GN=UEV1D PE=1 SV=1
trembl
ID F8RWS9
description Protein binding/ubiquitin-protein ligase 1 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2 variant 1d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14192: 28079-32081 , PASA_asmbl_14194: 28950-29180
cDNA
(Sanger)
(ID:Location)		 004_I16.ab1: 28218-31438 , 051_J14.ab1: 28218-31438 , 052_M13.ab1: 28079-31407

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159558_030 0.0 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
2 Hb_000500_130 0.0460405842 - - small GTPase [Hevea brasiliensis]
3 Hb_002400_220 0.0630037069 - - Vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_000272_100 0.0689723347 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
5 Hb_006569_020 0.0728936308 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
6 Hb_158092_070 0.0729784566 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
7 Hb_002553_020 0.0730667267 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009711_030 0.0755826991 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
9 Hb_007919_050 0.0764165249 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
10 Hb_001776_110 0.0777068677 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
11 Hb_033491_010 0.0786023096 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
12 Hb_024835_030 0.0788557579 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
13 Hb_003392_040 0.0793215333 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
14 Hb_003540_040 0.0802705331 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
15 Hb_005489_130 0.0805161739 - - calmodulin, putative [Ricinus communis]
16 Hb_022250_040 0.0808642413 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
17 Hb_000808_040 0.0814388728 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
18 Hb_002762_060 0.0819441798 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
19 Hb_001124_210 0.0827063169 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003994_180 0.08325442 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]

Gene co-expression network

sample Hb_159558_030 Hb_159558_030 Hb_000500_130 Hb_000500_130 Hb_159558_030--Hb_000500_130 Hb_002400_220 Hb_002400_220 Hb_159558_030--Hb_002400_220 Hb_000272_100 Hb_000272_100 Hb_159558_030--Hb_000272_100 Hb_006569_020 Hb_006569_020 Hb_159558_030--Hb_006569_020 Hb_158092_070 Hb_158092_070 Hb_159558_030--Hb_158092_070 Hb_002553_020 Hb_002553_020 Hb_159558_030--Hb_002553_020 Hb_000200_210 Hb_000200_210 Hb_000500_130--Hb_000200_210 Hb_000500_130--Hb_002400_220 Hb_004324_310 Hb_004324_310 Hb_000500_130--Hb_004324_310 Hb_125000_010 Hb_125000_010 Hb_000500_130--Hb_125000_010 Hb_022250_040 Hb_022250_040 Hb_000500_130--Hb_022250_040 Hb_007441_340 Hb_007441_340 Hb_002400_220--Hb_007441_340 Hb_033491_010 Hb_033491_010 Hb_002400_220--Hb_033491_010 Hb_001269_150 Hb_001269_150 Hb_002400_220--Hb_001269_150 Hb_000359_170 Hb_000359_170 Hb_002400_220--Hb_000359_170 Hb_000272_100--Hb_033491_010 Hb_000732_260 Hb_000732_260 Hb_000272_100--Hb_000732_260 Hb_003086_110 Hb_003086_110 Hb_000272_100--Hb_003086_110 Hb_003086_020 Hb_003086_020 Hb_000272_100--Hb_003086_020 Hb_004607_140 Hb_004607_140 Hb_000272_100--Hb_004607_140 Hb_000316_110 Hb_000316_110 Hb_006569_020--Hb_000316_110 Hb_006569_020--Hb_022250_040 Hb_001776_110 Hb_001776_110 Hb_006569_020--Hb_001776_110 Hb_001437_040 Hb_001437_040 Hb_006569_020--Hb_001437_040 Hb_004662_030 Hb_004662_030 Hb_006569_020--Hb_004662_030 Hb_133271_020 Hb_133271_020 Hb_158092_070--Hb_133271_020 Hb_003052_100 Hb_003052_100 Hb_158092_070--Hb_003052_100 Hb_004221_010 Hb_004221_010 Hb_158092_070--Hb_004221_010 Hb_003392_040 Hb_003392_040 Hb_158092_070--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_158092_070--Hb_001030_120 Hb_000975_290 Hb_000975_290 Hb_158092_070--Hb_000975_290 Hb_000155_190 Hb_000155_190 Hb_002553_020--Hb_000155_190 Hb_003728_020 Hb_003728_020 Hb_002553_020--Hb_003728_020 Hb_010128_130 Hb_010128_130 Hb_002553_020--Hb_010128_130 Hb_004884_220 Hb_004884_220 Hb_002553_020--Hb_004884_220 Hb_002553_020--Hb_000500_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
634.744 161.163 102 202.031 504.162 545.22
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
646.29 518.662 353.447 149.635 75.824

CAGE analysis