Hb_159582_010

Information

Type -
Description -
Location Contig159582: 2-991
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14195: 22-197
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159582_010 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_004958_010 0.1529888594 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000032_430 0.1756823457 - - conserved hypothetical protein [Ricinus communis]
4 Hb_160405_010 0.1936266501 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
5 Hb_032208_050 0.1958415233 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
6 Hb_106099_010 0.1987372263 - - -
7 Hb_000740_090 0.2037901701 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001195_420 0.2101252526 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
9 Hb_034280_010 0.2116317635 - - Protein bem46, putative [Ricinus communis]
10 Hb_003647_040 0.2119718262 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000000_110 0.2142668595 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
12 Hb_005694_180 0.2149716924 - - PREDICTED: cytochrome b5 [Jatropha curcas]
13 Hb_003430_080 0.2177862436 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000152_460 0.2186147859 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
15 Hb_028001_020 0.2194296262 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
16 Hb_001053_210 0.2202757685 - - -
17 Hb_002774_120 0.2210767099 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
18 Hb_001178_090 0.2219812913 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
19 Hb_001178_080 0.2226953301 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
20 Hb_000318_040 0.2235994163 - - hypothetical protein JCGZ_04877 [Jatropha curcas]

Gene co-expression network

sample Hb_159582_010 Hb_159582_010 Hb_004958_010 Hb_004958_010 Hb_159582_010--Hb_004958_010 Hb_000032_430 Hb_000032_430 Hb_159582_010--Hb_000032_430 Hb_160405_010 Hb_160405_010 Hb_159582_010--Hb_160405_010 Hb_032208_050 Hb_032208_050 Hb_159582_010--Hb_032208_050 Hb_106099_010 Hb_106099_010 Hb_159582_010--Hb_106099_010 Hb_000740_090 Hb_000740_090 Hb_159582_010--Hb_000740_090 Hb_001619_100 Hb_001619_100 Hb_004958_010--Hb_001619_100 Hb_001195_420 Hb_001195_420 Hb_004958_010--Hb_001195_420 Hb_102710_010 Hb_102710_010 Hb_004958_010--Hb_102710_010 Hb_023226_030 Hb_023226_030 Hb_004958_010--Hb_023226_030 Hb_001775_070 Hb_001775_070 Hb_004958_010--Hb_001775_070 Hb_001178_090 Hb_001178_090 Hb_000032_430--Hb_001178_090 Hb_000032_430--Hb_160405_010 Hb_003647_040 Hb_003647_040 Hb_000032_430--Hb_003647_040 Hb_002749_040 Hb_002749_040 Hb_000032_430--Hb_002749_040 Hb_002539_050 Hb_002539_050 Hb_000032_430--Hb_002539_050 Hb_003050_100 Hb_003050_100 Hb_000032_430--Hb_003050_100 Hb_004449_090 Hb_004449_090 Hb_160405_010--Hb_004449_090 Hb_005016_020 Hb_005016_020 Hb_160405_010--Hb_005016_020 Hb_000000_110 Hb_000000_110 Hb_160405_010--Hb_000000_110 Hb_001357_030 Hb_001357_030 Hb_160405_010--Hb_001357_030 Hb_001178_080 Hb_001178_080 Hb_160405_010--Hb_001178_080 Hb_002592_050 Hb_002592_050 Hb_032208_050--Hb_002592_050 Hb_032208_050--Hb_003050_100 Hb_034280_010 Hb_034280_010 Hb_032208_050--Hb_034280_010 Hb_005694_180 Hb_005694_180 Hb_032208_050--Hb_005694_180 Hb_032208_050--Hb_001178_090 Hb_032208_050--Hb_003647_040 Hb_078081_010 Hb_078081_010 Hb_106099_010--Hb_078081_010 Hb_002681_120 Hb_002681_120 Hb_106099_010--Hb_002681_120 Hb_000300_420 Hb_000300_420 Hb_106099_010--Hb_000300_420 Hb_000236_190 Hb_000236_190 Hb_106099_010--Hb_000236_190 Hb_106099_010--Hb_032208_050 Hb_001053_210 Hb_001053_210 Hb_000740_090--Hb_001053_210 Hb_003430_080 Hb_003430_080 Hb_000740_090--Hb_003430_080 Hb_147245_010 Hb_147245_010 Hb_000740_090--Hb_147245_010 Hb_001545_130 Hb_001545_130 Hb_000740_090--Hb_001545_130 Hb_000940_210 Hb_000940_210 Hb_000740_090--Hb_000940_210 Hb_034507_060 Hb_034507_060 Hb_000740_090--Hb_034507_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0784322 0.17568 0.120358 0.567466 0.0449477 0.059206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10263 0 0 0.259746 0.0825044

CAGE analysis