Hb_159809_050

Information

Type -
Description -
Location Contig159809: 68193-69314
Sequence    

Annotation

kegg
ID rcu:RCOM_0938030
description AT14A, putative
nr
ID XP_002519094.1
description AT14A, putative [Ricinus communis]
swissprot
ID Q9SYZ7
description UPF0496 protein At4g34320 OS=Arabidopsis thaliana GN=At4g34320 PE=2 SV=1
trembl
ID B9RZC5
description AT14A, putative OS=Ricinus communis GN=RCOM_0938030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14244: 67108-68594 , PASA_asmbl_14245: 67679-67969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159809_050 0.0 - - AT14A, putative [Ricinus communis]
2 Hb_007253_010 0.0647824664 - - syntaxin, putative [Ricinus communis]
3 Hb_000749_070 0.0983684436 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
4 Hb_013358_020 0.1001024537 - - ccr4-associated factor, putative [Ricinus communis]
5 Hb_003581_280 0.1178309895 - - KINASE 2B family protein [Populus trichocarpa]
6 Hb_000035_050 0.1183601738 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
7 Hb_001135_030 0.1217435301 - - PREDICTED: interaptin-like [Jatropha curcas]
8 Hb_000445_100 0.1222303968 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
9 Hb_018790_050 0.1229409065 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
10 Hb_124677_040 0.1229499477 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
11 Hb_004117_170 0.1250250905 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
12 Hb_001246_160 0.1340753477 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
13 Hb_000421_230 0.1354994712 - - retinal degeneration B beta, putative [Ricinus communis]
14 Hb_000009_200 0.1424220985 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
15 Hb_005714_100 0.1451705874 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
16 Hb_001376_010 0.1466377376 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
17 Hb_056196_060 0.1469579359 - - hexokinase [Manihot esculenta]
18 Hb_002281_010 0.148720147 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
19 Hb_041895_040 0.1500734769 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001769_110 0.150139751 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]

Gene co-expression network

sample Hb_159809_050 Hb_159809_050 Hb_007253_010 Hb_007253_010 Hb_159809_050--Hb_007253_010 Hb_000749_070 Hb_000749_070 Hb_159809_050--Hb_000749_070 Hb_013358_020 Hb_013358_020 Hb_159809_050--Hb_013358_020 Hb_003581_280 Hb_003581_280 Hb_159809_050--Hb_003581_280 Hb_000035_050 Hb_000035_050 Hb_159809_050--Hb_000035_050 Hb_001135_030 Hb_001135_030 Hb_159809_050--Hb_001135_030 Hb_007253_010--Hb_000749_070 Hb_007253_010--Hb_013358_020 Hb_004117_170 Hb_004117_170 Hb_007253_010--Hb_004117_170 Hb_007253_010--Hb_000035_050 Hb_018790_050 Hb_018790_050 Hb_007253_010--Hb_018790_050 Hb_000749_070--Hb_013358_020 Hb_001246_160 Hb_001246_160 Hb_000749_070--Hb_001246_160 Hb_000749_070--Hb_004117_170 Hb_000749_070--Hb_000035_050 Hb_013358_020--Hb_000035_050 Hb_013358_020--Hb_004117_170 Hb_013358_020--Hb_018790_050 Hb_084849_010 Hb_084849_010 Hb_013358_020--Hb_084849_010 Hb_002900_120 Hb_002900_120 Hb_003581_280--Hb_002900_120 Hb_000045_260 Hb_000045_260 Hb_003581_280--Hb_000045_260 Hb_124677_040 Hb_124677_040 Hb_003581_280--Hb_124677_040 Hb_000421_230 Hb_000421_230 Hb_003581_280--Hb_000421_230 Hb_005332_140 Hb_005332_140 Hb_003581_280--Hb_005332_140 Hb_004108_240 Hb_004108_240 Hb_003581_280--Hb_004108_240 Hb_000035_050--Hb_004117_170 Hb_005714_100 Hb_005714_100 Hb_000035_050--Hb_005714_100 Hb_000035_050--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_000035_050--Hb_056196_060 Hb_001376_010 Hb_001376_010 Hb_000035_050--Hb_001376_010 Hb_000203_270 Hb_000203_270 Hb_001135_030--Hb_000203_270 Hb_001135_030--Hb_000035_050 Hb_001135_030--Hb_007253_010 Hb_001135_030--Hb_013358_020 Hb_004218_120 Hb_004218_120 Hb_001135_030--Hb_004218_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.562498 8.21165 7.38941 6.12302 1.69492 1.44885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84766 1.83395 1.66762 0.943822 1.56929

CAGE analysis