Hb_159809_080

Information

Type -
Description -
Location Contig159809: 121064-124221
Sequence    

Annotation

kegg
ID rcu:RCOM_0938290
description multidrug resistance pump, putative
nr
ID XP_002519100.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID B9RZD1
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0938290 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14252: 121760-121905 , PASA_asmbl_14253: 122254-122388 , PASA_asmbl_14254: 122509-123670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159809_080 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_179138_010 0.0842539782 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
3 Hb_003983_010 0.1166254565 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
4 Hb_000011_320 0.1239875981 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
5 Hb_008304_050 0.1406685384 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
6 Hb_001174_020 0.1486419901 - - -
7 Hb_011849_020 0.1563827295 - - dioxygenase family protein [Populus trichocarpa]
8 Hb_009122_010 0.159251735 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_000685_100 0.1600799873 - - hypothetical protein POPTR_0001s10630g [Populus trichocarpa]
10 Hb_000934_180 0.1663407128 - - hypothetical protein JCGZ_25237 [Jatropha curcas]
11 Hb_000389_100 0.1677310434 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
12 Hb_000014_200 0.1713872587 - - PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]
13 Hb_090390_010 0.1756317259 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
14 Hb_004893_010 0.176395906 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
15 Hb_004785_090 0.1782448283 - - hypothetical protein MIMGU_mgv1a018797mg [Erythranthe guttata]
16 Hb_003212_020 0.1788625405 - - hypothetical protein PHAVU_009G114800g [Phaseolus vulgaris]
17 Hb_001269_580 0.179638144 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
18 Hb_003304_090 0.1804281211 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
19 Hb_000561_040 0.1828713746 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
20 Hb_002808_010 0.1836638802 - - cinnamoyl-CoA reductase [Hevea brasiliensis]

Gene co-expression network

sample Hb_159809_080 Hb_159809_080 Hb_179138_010 Hb_179138_010 Hb_159809_080--Hb_179138_010 Hb_003983_010 Hb_003983_010 Hb_159809_080--Hb_003983_010 Hb_000011_320 Hb_000011_320 Hb_159809_080--Hb_000011_320 Hb_008304_050 Hb_008304_050 Hb_159809_080--Hb_008304_050 Hb_001174_020 Hb_001174_020 Hb_159809_080--Hb_001174_020 Hb_011849_020 Hb_011849_020 Hb_159809_080--Hb_011849_020 Hb_179138_010--Hb_003983_010 Hb_179138_010--Hb_001174_020 Hb_179138_010--Hb_000011_320 Hb_179138_010--Hb_011849_020 Hb_179138_010--Hb_008304_050 Hb_090390_010 Hb_090390_010 Hb_003983_010--Hb_090390_010 Hb_000254_060 Hb_000254_060 Hb_003983_010--Hb_000254_060 Hb_094437_030 Hb_094437_030 Hb_003983_010--Hb_094437_030 Hb_003983_010--Hb_008304_050 Hb_003304_090 Hb_003304_090 Hb_000011_320--Hb_003304_090 Hb_000561_040 Hb_000561_040 Hb_000011_320--Hb_000561_040 Hb_000011_320--Hb_008304_050 Hb_000705_050 Hb_000705_050 Hb_000011_320--Hb_000705_050 Hb_000389_100 Hb_000389_100 Hb_000011_320--Hb_000389_100 Hb_004893_010 Hb_004893_010 Hb_000011_320--Hb_004893_010 Hb_008304_050--Hb_000389_100 Hb_008304_050--Hb_004893_010 Hb_003633_170 Hb_003633_170 Hb_008304_050--Hb_003633_170 Hb_002566_020 Hb_002566_020 Hb_008304_050--Hb_002566_020 Hb_031224_010 Hb_031224_010 Hb_008304_050--Hb_031224_010 Hb_002783_180 Hb_002783_180 Hb_008304_050--Hb_002783_180 Hb_002808_010 Hb_002808_010 Hb_001174_020--Hb_002808_010 Hb_003212_020 Hb_003212_020 Hb_001174_020--Hb_003212_020 Hb_001174_020--Hb_000705_050 Hb_001174_020--Hb_000011_320 Hb_001174_020--Hb_003304_090 Hb_000163_010 Hb_000163_010 Hb_011849_020--Hb_000163_010 Hb_003913_060 Hb_003913_060 Hb_011849_020--Hb_003913_060 Hb_015978_010 Hb_015978_010 Hb_011849_020--Hb_015978_010 Hb_011849_020--Hb_000254_060 Hb_000009_430 Hb_000009_430 Hb_011849_020--Hb_000009_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0401837 0.465597 0.253171 9.62499 0.0151831 0.0229587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0184119 0.0289759 0.0275973 5.047 4.36917

CAGE analysis