Hb_159938_010

Information

Type -
Description -
Location Contig159938: 30-762
Sequence    

Annotation

kegg
ID rcu:RCOM_1429720
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002512305.1
description phosphoprotein phosphatase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9REY6
description Phosphoprotein phosphatase, putative OS=Ricinus communis GN=RCOM_1429720 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159938_010 0.0 - - phosphoprotein phosphatase, putative [Ricinus communis]
2 Hb_043792_020 0.1220088083 - - Retrotransposon gag protein [Medicago truncatula]
3 Hb_002473_140 0.1261930341 - - -
4 Hb_154997_010 0.1269180423 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
5 Hb_002869_070 0.1669281187 - - -
6 Hb_001519_210 0.1720378277 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
7 Hb_088410_010 0.1734280359 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_006933_010 0.1761048897 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_128531_010 0.1853097272 - - phosphoprotein phosphatase, putative [Ricinus communis]
10 Hb_142570_010 0.1906614122 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
11 Hb_050334_010 0.1950273677 - - -
12 Hb_002495_050 0.196880622 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
13 Hb_001124_170 0.1988818567 - - putative retrotransposon protein [Phyllostachys edulis]
14 Hb_005439_010 0.2106002139 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
15 Hb_171685_030 0.2106009517 - - URF-1 [Citrullus lanatus]
16 Hb_004124_010 0.2176319214 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
17 Hb_062192_060 0.231240615 - - maturase (mitochondrion) [Hevea brasiliensis]
18 Hb_143004_010 0.2346050343 - - PREDICTED: uncharacterized J domain-containing protein C1071.09c [Eucalyptus grandis]
19 Hb_000614_270 0.2421764635 - - -
20 Hb_002482_050 0.2430392307 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_159938_010 Hb_159938_010 Hb_043792_020 Hb_043792_020 Hb_159938_010--Hb_043792_020 Hb_002473_140 Hb_002473_140 Hb_159938_010--Hb_002473_140 Hb_154997_010 Hb_154997_010 Hb_159938_010--Hb_154997_010 Hb_002869_070 Hb_002869_070 Hb_159938_010--Hb_002869_070 Hb_001519_210 Hb_001519_210 Hb_159938_010--Hb_001519_210 Hb_088410_010 Hb_088410_010 Hb_159938_010--Hb_088410_010 Hb_043792_020--Hb_001519_210 Hb_005439_010 Hb_005439_010 Hb_043792_020--Hb_005439_010 Hb_043792_020--Hb_154997_010 Hb_128531_010 Hb_128531_010 Hb_043792_020--Hb_128531_010 Hb_050334_010 Hb_050334_010 Hb_043792_020--Hb_050334_010 Hb_002473_140--Hb_088410_010 Hb_002473_140--Hb_002869_070 Hb_002473_140--Hb_050334_010 Hb_002473_140--Hb_001519_210 Hb_002473_140--Hb_154997_010 Hb_006933_010 Hb_006933_010 Hb_154997_010--Hb_006933_010 Hb_002495_050 Hb_002495_050 Hb_154997_010--Hb_002495_050 Hb_001124_170 Hb_001124_170 Hb_154997_010--Hb_001124_170 Hb_154997_010--Hb_002869_070 Hb_004124_010 Hb_004124_010 Hb_154997_010--Hb_004124_010 Hb_002869_070--Hb_050334_010 Hb_002869_070--Hb_006933_010 Hb_002869_070--Hb_004124_010 Hb_006157_050 Hb_006157_050 Hb_002869_070--Hb_006157_050 Hb_001519_210--Hb_050334_010 Hb_012295_020 Hb_012295_020 Hb_001519_210--Hb_012295_020 Hb_032531_010 Hb_032531_010 Hb_001519_210--Hb_032531_010 Hb_012071_010 Hb_012071_010 Hb_001519_210--Hb_012071_010 Hb_001519_210--Hb_002869_070 Hb_002122_020 Hb_002122_020 Hb_088410_010--Hb_002122_020 Hb_088410_010--Hb_002869_070 Hb_088410_010--Hb_050334_010 Hb_142570_010 Hb_142570_010 Hb_088410_010--Hb_142570_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.304361 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.71024 2.42626 12.1576

CAGE analysis