Hb_160246_010

Information

Type -
Description -
Location Contig160246: 3633-5555
Sequence    

Annotation

kegg
ID rcu:RCOM_0958730
description calcium ion binding protein, putative
nr
ID XP_002522155.1
description calcium ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S836
description Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_0958730 PE=4 SV=1
Gene Ontology
ID GO:0000325
description calcium ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_160246_010 0.0 - - calcium ion binding protein, putative [Ricinus communis]
2 Hb_001143_150 0.1318001502 - - PREDICTED: mitochondrial protein import protein MAS5-like [Populus euphratica]
3 Hb_000175_150 0.1501409747 desease resistance Gene Name: NB-ARC hypothetical protein B456_009G311700 [Gossypium raimondii]
4 Hb_003643_030 0.2459764599 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Populus euphratica]
5 Hb_003266_070 0.2547392528 - - -
6 Hb_000112_100 0.2672915841 - - glutamate receptor 2 plant, putative [Ricinus communis]
7 Hb_006655_040 0.2785248951 - - tau class glutathione transferase GSTU15 [Populus trichocarpa]
8 Hb_000031_330 0.2809104637 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
9 Hb_034904_010 0.2936706356 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
10 Hb_000057_190 0.2941739598 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000111_430 0.3102091429 - - PREDICTED: cytosolic sulfotransferase 15-like [Jatropha curcas]
12 Hb_000663_070 0.3128002669 - - cyclin A, putative [Ricinus communis]
13 Hb_005946_120 0.3170346157 - - peptidase, putative [Ricinus communis]
14 Hb_003740_030 0.3211087314 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
15 Hb_000087_090 0.3219000436 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
16 Hb_000563_180 0.3227009716 - - PREDICTED: J protein JJJ2 [Jatropha curcas]
17 Hb_000740_020 0.3322704308 transcription factor TF Family: MYB-related asymmetric leaves1 and rough sheath, putative [Ricinus communis]
18 Hb_002338_030 0.3335120021 - - PREDICTED: 60S acidic ribosomal protein P1-like [Tarenaya hassleriana]
19 Hb_001754_160 0.3377443823 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
20 Hb_001080_050 0.3379782494 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]

Gene co-expression network

sample Hb_160246_010 Hb_160246_010 Hb_001143_150 Hb_001143_150 Hb_160246_010--Hb_001143_150 Hb_000175_150 Hb_000175_150 Hb_160246_010--Hb_000175_150 Hb_003643_030 Hb_003643_030 Hb_160246_010--Hb_003643_030 Hb_003266_070 Hb_003266_070 Hb_160246_010--Hb_003266_070 Hb_000112_100 Hb_000112_100 Hb_160246_010--Hb_000112_100 Hb_006655_040 Hb_006655_040 Hb_160246_010--Hb_006655_040 Hb_001143_150--Hb_003266_070 Hb_001143_150--Hb_000175_150 Hb_001143_150--Hb_003643_030 Hb_034904_010 Hb_034904_010 Hb_001143_150--Hb_034904_010 Hb_000740_020 Hb_000740_020 Hb_001143_150--Hb_000740_020 Hb_003740_030 Hb_003740_030 Hb_000175_150--Hb_003740_030 Hb_000663_070 Hb_000663_070 Hb_000175_150--Hb_000663_070 Hb_000111_430 Hb_000111_430 Hb_000175_150--Hb_000111_430 Hb_004163_020 Hb_004163_020 Hb_000175_150--Hb_004163_020 Hb_001754_160 Hb_001754_160 Hb_003643_030--Hb_001754_160 Hb_003643_030--Hb_003266_070 Hb_001195_210 Hb_001195_210 Hb_003643_030--Hb_001195_210 Hb_000116_200 Hb_000116_200 Hb_003643_030--Hb_000116_200 Hb_000087_090 Hb_000087_090 Hb_003266_070--Hb_000087_090 Hb_003266_070--Hb_001754_160 Hb_011099_010 Hb_011099_010 Hb_003266_070--Hb_011099_010 Hb_020178_010 Hb_020178_010 Hb_000112_100--Hb_020178_010 Hb_000953_080 Hb_000953_080 Hb_000112_100--Hb_000953_080 Hb_002918_130 Hb_002918_130 Hb_000112_100--Hb_002918_130 Hb_005946_120 Hb_005946_120 Hb_000112_100--Hb_005946_120 Hb_000031_330 Hb_000031_330 Hb_000112_100--Hb_000031_330 Hb_000007_430 Hb_000007_430 Hb_000112_100--Hb_000007_430 Hb_000809_070 Hb_000809_070 Hb_006655_040--Hb_000809_070 Hb_003095_090 Hb_003095_090 Hb_006655_040--Hb_003095_090 Hb_003626_010 Hb_003626_010 Hb_006655_040--Hb_003626_010 Hb_007451_080 Hb_007451_080 Hb_006655_040--Hb_007451_080 Hb_002374_500 Hb_002374_500 Hb_006655_040--Hb_002374_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.127827 0.0787733 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0754349 0 0.0617487 0

CAGE analysis