Hb_160479_010

Information

Type -
Description -
Location Contig160479: 63-625
Sequence    

Annotation

kegg
ID rcu:RCOM_0483880
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_002531703.1
description hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
swissprot
ID Q94CD8
description Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1
trembl
ID B9T0D4
description Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis GN=RCOM_0483880 PE=4 SV=1
Gene Ontology
ID GO:0004673
description glucan endo- -beta-glucosidase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_160479_010 0.0 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
2 Hb_010068_010 0.0217440408 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
3 Hb_033691_010 0.0350176496 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
4 Hb_000926_240 0.0440037514 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]
5 Hb_051900_020 0.0607025128 - - JHL22C18.7 [Jatropha curcas]
6 Hb_004317_020 0.0806230461 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
7 Hb_000935_060 0.0823891964 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
8 Hb_000566_060 0.086859845 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004102_150 0.0907734202 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
10 Hb_001369_510 0.0987148684 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
11 Hb_034858_010 0.1023478351 - - -
12 Hb_002235_330 0.1032038395 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
13 Hb_100953_010 0.1149721898 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
14 Hb_041332_010 0.1172626541 - - DNA binding protein, putative [Ricinus communis]
15 Hb_005348_020 0.1303054336 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007138_010 0.1311103832 - - PREDICTED: putative laccase-9 [Jatropha curcas]
17 Hb_002267_110 0.1348516053 - - -
18 Hb_000740_140 0.135142097 transcription factor TF Family: OFP PREDICTED: probable transcription repressor OFP9 [Jatropha curcas]
19 Hb_011609_200 0.1364785897 - - PREDICTED: ultraviolet-B receptor UVR8-like isoform X3 [Populus euphratica]
20 Hb_000917_070 0.1448763753 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_160479_010 Hb_160479_010 Hb_010068_010 Hb_010068_010 Hb_160479_010--Hb_010068_010 Hb_033691_010 Hb_033691_010 Hb_160479_010--Hb_033691_010 Hb_000926_240 Hb_000926_240 Hb_160479_010--Hb_000926_240 Hb_051900_020 Hb_051900_020 Hb_160479_010--Hb_051900_020 Hb_004317_020 Hb_004317_020 Hb_160479_010--Hb_004317_020 Hb_000935_060 Hb_000935_060 Hb_160479_010--Hb_000935_060 Hb_010068_010--Hb_000926_240 Hb_010068_010--Hb_033691_010 Hb_010068_010--Hb_004317_020 Hb_010068_010--Hb_051900_020 Hb_000566_060 Hb_000566_060 Hb_010068_010--Hb_000566_060 Hb_033691_010--Hb_051900_020 Hb_033691_010--Hb_000926_240 Hb_001369_510 Hb_001369_510 Hb_033691_010--Hb_001369_510 Hb_041332_010 Hb_041332_010 Hb_033691_010--Hb_041332_010 Hb_000926_240--Hb_000935_060 Hb_004102_150 Hb_004102_150 Hb_000926_240--Hb_004102_150 Hb_000926_240--Hb_004317_020 Hb_034858_010 Hb_034858_010 Hb_000926_240--Hb_034858_010 Hb_002235_330 Hb_002235_330 Hb_051900_020--Hb_002235_330 Hb_051900_020--Hb_000566_060 Hb_051900_020--Hb_004317_020 Hb_004317_020--Hb_000566_060 Hb_004317_020--Hb_034858_010 Hb_000935_060--Hb_004102_150 Hb_000917_070 Hb_000917_070 Hb_000935_060--Hb_000917_070 Hb_005144_140 Hb_005144_140 Hb_000935_060--Hb_005144_140 Hb_000935_060--Hb_010068_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.36769 2.31147 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.151452 0

CAGE analysis