Hb_160576_010

Information

Type -
Description -
Location Contig160576: 663-2001
Sequence    

Annotation

kegg
ID vvi:100253347
description glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like
nr
ID XP_012066187.1
description PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
swissprot
ID D7SFH9
description Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 OS=Arabidopsis thaliana GN=GDPDL2 PE=1 SV=1
trembl
ID A0A067LE94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23767 PE=3 SV=1
Gene Ontology
ID GO:0000166
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_160576_010 0.0 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
2 Hb_000060_100 0.0661239395 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
3 Hb_002110_050 0.0820732613 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000032_230 0.0924120013 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
5 Hb_002218_080 0.1005505133 - - Ankyrin repeat family protein, putative [Theobroma cacao]
6 Hb_001956_160 0.1011740716 - - hypothetical protein L484_009438 [Morus notabilis]
7 Hb_002548_020 0.1123067533 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
8 Hb_004241_100 0.1176087066 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
9 Hb_001104_270 0.1246465137 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
10 Hb_000024_020 0.126373768 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
11 Hb_001098_020 0.1288550952 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
12 Hb_007441_150 0.1314718199 - - Ankyrin repeat family protein [Theobroma cacao]
13 Hb_134022_010 0.1335442069 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
14 Hb_113396_010 0.1348478294 - - cytochrome P450, putative [Ricinus communis]
15 Hb_004945_050 0.1366554111 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
16 Hb_026415_010 0.139235475 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
17 Hb_090306_010 0.1409104127 - - hypothetical protein POPTR_0007s02300g [Populus trichocarpa]
18 Hb_032260_100 0.1411408555 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
19 Hb_000780_110 0.1421744976 - - cation-transporting atpase plant, putative [Ricinus communis]
20 Hb_000656_350 0.1424894389 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_160576_010 Hb_160576_010 Hb_000060_100 Hb_000060_100 Hb_160576_010--Hb_000060_100 Hb_002110_050 Hb_002110_050 Hb_160576_010--Hb_002110_050 Hb_000032_230 Hb_000032_230 Hb_160576_010--Hb_000032_230 Hb_002218_080 Hb_002218_080 Hb_160576_010--Hb_002218_080 Hb_001956_160 Hb_001956_160 Hb_160576_010--Hb_001956_160 Hb_002548_020 Hb_002548_020 Hb_160576_010--Hb_002548_020 Hb_004945_050 Hb_004945_050 Hb_000060_100--Hb_004945_050 Hb_001104_270 Hb_001104_270 Hb_000060_100--Hb_001104_270 Hb_000060_100--Hb_002218_080 Hb_000060_100--Hb_002110_050 Hb_000060_100--Hb_001956_160 Hb_002110_050--Hb_002548_020 Hb_002110_050--Hb_002218_080 Hb_004241_100 Hb_004241_100 Hb_002110_050--Hb_004241_100 Hb_002110_050--Hb_000032_230 Hb_134022_010 Hb_134022_010 Hb_002110_050--Hb_134022_010 Hb_000780_110 Hb_000780_110 Hb_000032_230--Hb_000780_110 Hb_000032_230--Hb_001956_160 Hb_000032_230--Hb_004241_100 Hb_000032_230--Hb_002548_020 Hb_001310_080 Hb_001310_080 Hb_002218_080--Hb_001310_080 Hb_113396_010 Hb_113396_010 Hb_002218_080--Hb_113396_010 Hb_002218_080--Hb_002548_020 Hb_000024_020 Hb_000024_020 Hb_002218_080--Hb_000024_020 Hb_004112_050 Hb_004112_050 Hb_002218_080--Hb_004112_050 Hb_008948_110 Hb_008948_110 Hb_001956_160--Hb_008948_110 Hb_032260_100 Hb_032260_100 Hb_001956_160--Hb_032260_100 Hb_001956_160--Hb_002110_050 Hb_002548_020--Hb_004241_100 Hb_070613_010 Hb_070613_010 Hb_002548_020--Hb_070613_010 Hb_000127_200 Hb_000127_200 Hb_002548_020--Hb_000127_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 13.2986 3.8122 4.65852 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0386074 0 0.046549 2.29461

CAGE analysis