Hb_160608_010

Information

Type -
Description -
Location Contig160608: 3115-15118
Sequence    

Annotation

kegg
ID pop:POPTR_0003s01740g
description POPTRDRAFT_756576; hypothetical protein
nr
ID XP_011004968.1
description PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
swissprot
ID Q94F62
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2
trembl
ID B9GZS3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s01740g PE=3 SV=2
Gene Ontology
ID GO:0016021
description brassinosteroid insensitive 1-associated receptor kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14385: 3410-15151 , PASA_asmbl_14386: 3410-15151 , PASA_asmbl_14387: 3235-12640
cDNA
(Sanger)
(ID:Location)		 021_B04.ab1: 3235-10935

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_160608_010 0.0 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
2 Hb_006478_030 0.0533351721 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
3 Hb_003661_010 0.0571874817 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
4 Hb_005305_130 0.06150505 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
5 Hb_001414_010 0.0659165099 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
6 Hb_001507_050 0.0664735627 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000318_150 0.0682808663 - - RNA-binding protein Nova-1, putative [Ricinus communis]
8 Hb_000358_220 0.0688119371 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
9 Hb_009476_120 0.0694688355 - - Clathrin heavy chain 1 [Glycine soja]
10 Hb_048476_080 0.0699660165 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
11 Hb_143629_020 0.0715295511 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
12 Hb_009158_060 0.0720370951 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
13 Hb_008165_020 0.0729099947 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
14 Hb_003680_020 0.0737067297 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_007245_020 0.0738660981 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
16 Hb_000844_050 0.0758591554 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
17 Hb_000960_080 0.0765847819 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
18 Hb_004586_090 0.0769983449 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
19 Hb_000103_290 0.0772965155 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
20 Hb_000009_030 0.0774065303 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_160608_010 Hb_160608_010 Hb_006478_030 Hb_006478_030 Hb_160608_010--Hb_006478_030 Hb_003661_010 Hb_003661_010 Hb_160608_010--Hb_003661_010 Hb_005305_130 Hb_005305_130 Hb_160608_010--Hb_005305_130 Hb_001414_010 Hb_001414_010 Hb_160608_010--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_160608_010--Hb_001507_050 Hb_000318_150 Hb_000318_150 Hb_160608_010--Hb_000318_150 Hb_007245_020 Hb_007245_020 Hb_006478_030--Hb_007245_020 Hb_002357_070 Hb_002357_070 Hb_006478_030--Hb_002357_070 Hb_006478_030--Hb_000318_150 Hb_000080_110 Hb_000080_110 Hb_006478_030--Hb_000080_110 Hb_000206_160 Hb_000206_160 Hb_006478_030--Hb_000206_160 Hb_000844_050 Hb_000844_050 Hb_003661_010--Hb_000844_050 Hb_048476_080 Hb_048476_080 Hb_003661_010--Hb_048476_080 Hb_000300_030 Hb_000300_030 Hb_003661_010--Hb_000300_030 Hb_003680_020 Hb_003680_020 Hb_003661_010--Hb_003680_020 Hb_003661_010--Hb_001414_010 Hb_009158_060 Hb_009158_060 Hb_005305_130--Hb_009158_060 Hb_005305_130--Hb_003661_010 Hb_005305_130--Hb_001414_010 Hb_029552_020 Hb_029552_020 Hb_005305_130--Hb_029552_020 Hb_001159_060 Hb_001159_060 Hb_005305_130--Hb_001159_060 Hb_021977_010 Hb_021977_010 Hb_001414_010--Hb_021977_010 Hb_009476_120 Hb_009476_120 Hb_001414_010--Hb_009476_120 Hb_008165_020 Hb_008165_020 Hb_001414_010--Hb_008165_020 Hb_001414_010--Hb_000300_030 Hb_000960_080 Hb_000960_080 Hb_001507_050--Hb_000960_080 Hb_001507_050--Hb_003680_020 Hb_001507_050--Hb_048476_080 Hb_000270_170 Hb_000270_170 Hb_001507_050--Hb_000270_170 Hb_001507_050--Hb_008165_020 Hb_000318_150--Hb_000960_080 Hb_000318_150--Hb_002357_070 Hb_000787_200 Hb_000787_200 Hb_000318_150--Hb_000787_200 Hb_000059_240 Hb_000059_240 Hb_000318_150--Hb_000059_240 Hb_000318_150--Hb_000270_170 Hb_000173_190 Hb_000173_190 Hb_000318_150--Hb_000173_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.19993 16.0842 15.1892 13.2657 7.44264 5.9389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.43987 3.38662 5.84789 15.305 18.1388

CAGE analysis