Hb_160818_010

Information

Type -
Description -
Location Contig160818: 2-1006
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_160818_010 0.0 - - -
2 Hb_000491_080 0.0668538937 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
3 Hb_002169_010 0.0700986137 - - PREDICTED: la-related protein 6B [Jatropha curcas]
4 Hb_001776_080 0.0720100436 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
5 Hb_000320_440 0.0790527833 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
6 Hb_011496_010 0.0799401228 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
7 Hb_005314_010 0.0810988198 - - nucleotide binding protein, putative [Ricinus communis]
8 Hb_004931_040 0.0820878299 - - splicing factor-related family protein [Populus trichocarpa]
9 Hb_001439_180 0.0832035763 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
10 Hb_029281_010 0.0837110439 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
11 Hb_001009_050 0.0844246781 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
12 Hb_000176_140 0.0859273955 - - PREDICTED: bystin [Jatropha curcas]
13 Hb_003734_130 0.0869410471 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
14 Hb_011316_030 0.0879374012 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
15 Hb_001034_020 0.08804088 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
16 Hb_002377_050 0.091899679 - - Agmatine deiminase, putative [Ricinus communis]
17 Hb_002675_190 0.0926237181 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000015_010 0.0945913265 - - -
19 Hb_018663_020 0.0947292411 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
20 Hb_000573_040 0.0948718554 - - hypothetical protein JCGZ_19524 [Jatropha curcas]

Gene co-expression network

sample Hb_160818_010 Hb_160818_010 Hb_000491_080 Hb_000491_080 Hb_160818_010--Hb_000491_080 Hb_002169_010 Hb_002169_010 Hb_160818_010--Hb_002169_010 Hb_001776_080 Hb_001776_080 Hb_160818_010--Hb_001776_080 Hb_000320_440 Hb_000320_440 Hb_160818_010--Hb_000320_440 Hb_011496_010 Hb_011496_010 Hb_160818_010--Hb_011496_010 Hb_005314_010 Hb_005314_010 Hb_160818_010--Hb_005314_010 Hb_011316_030 Hb_011316_030 Hb_000491_080--Hb_011316_030 Hb_000491_080--Hb_001776_080 Hb_002377_050 Hb_002377_050 Hb_000491_080--Hb_002377_050 Hb_002818_040 Hb_002818_040 Hb_000491_080--Hb_002818_040 Hb_006029_010 Hb_006029_010 Hb_000491_080--Hb_006029_010 Hb_029281_010 Hb_029281_010 Hb_002169_010--Hb_029281_010 Hb_002169_010--Hb_011496_010 Hb_000462_150 Hb_000462_150 Hb_002169_010--Hb_000462_150 Hb_002169_010--Hb_002377_050 Hb_002169_010--Hb_002818_040 Hb_000176_140 Hb_000176_140 Hb_001776_080--Hb_000176_140 Hb_001776_080--Hb_000320_440 Hb_002149_040 Hb_002149_040 Hb_001776_080--Hb_002149_040 Hb_000179_250 Hb_000179_250 Hb_001776_080--Hb_000179_250 Hb_001776_080--Hb_011316_030 Hb_000088_180 Hb_000088_180 Hb_000320_440--Hb_000088_180 Hb_000172_530 Hb_000172_530 Hb_000320_440--Hb_000172_530 Hb_000260_700 Hb_000260_700 Hb_000320_440--Hb_000260_700 Hb_009615_110 Hb_009615_110 Hb_000320_440--Hb_009615_110 Hb_003777_220 Hb_003777_220 Hb_000320_440--Hb_003777_220 Hb_011496_010--Hb_029281_010 Hb_011496_010--Hb_000462_150 Hb_011496_010--Hb_002818_040 Hb_003638_140 Hb_003638_140 Hb_011496_010--Hb_003638_140 Hb_001936_050 Hb_001936_050 Hb_011496_010--Hb_001936_050 Hb_000001_180 Hb_000001_180 Hb_005314_010--Hb_000001_180 Hb_005314_010--Hb_002818_040 Hb_000413_130 Hb_000413_130 Hb_005314_010--Hb_000413_130 Hb_024399_010 Hb_024399_010 Hb_005314_010--Hb_024399_010 Hb_005914_230 Hb_005914_230 Hb_005314_010--Hb_005914_230 Hb_005314_010--Hb_029281_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
307.569 82.1106 19.5242 10.238 272.795 262.609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
145.482 72.2037 117.673 58.1997 17.2167

CAGE analysis