Hb_160950_010

Information

Type -
Description -
Location Contig160950: 290-823
Sequence    

Annotation

kegg
ID pop:POPTR_0001s43820g
description hypothetical protein
nr
ID XP_012434158.1
description PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVE7
description Uncharacterized protein OS=Gossypium arboreum GN=F383_16817 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_160950_010 0.0 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
2 Hb_009083_020 0.018990972 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
3 Hb_010252_010 0.037645807 - - -
4 Hb_002163_070 0.0443066434 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
5 Hb_039440_010 0.0555241248 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000248_080 0.0694746396 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_185437_010 0.0697085617 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
8 Hb_005773_010 0.0767745165 - - -
9 Hb_137862_020 0.077734884 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
10 Hb_119583_030 0.0837265043 - - unnamed protein product [Vitis vinifera]
11 Hb_136973_020 0.0863236309 - - -
12 Hb_000025_800 0.0870678825 - - hypothetical protein VITISV_020143 [Vitis vinifera]
13 Hb_001518_050 0.0879195756 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_000072_010 0.0903445963 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
15 Hb_000628_050 0.0963988638 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_057721_010 0.1065729769 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_002849_010 0.1119507751 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
18 Hb_005928_010 0.1152969361 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
19 Hb_149194_010 0.1220109277 - - hypothetical protein JCGZ_17021 [Jatropha curcas]
20 Hb_000170_260 0.1235425609 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_160950_010 Hb_160950_010 Hb_009083_020 Hb_009083_020 Hb_160950_010--Hb_009083_020 Hb_010252_010 Hb_010252_010 Hb_160950_010--Hb_010252_010 Hb_002163_070 Hb_002163_070 Hb_160950_010--Hb_002163_070 Hb_039440_010 Hb_039440_010 Hb_160950_010--Hb_039440_010 Hb_000248_080 Hb_000248_080 Hb_160950_010--Hb_000248_080 Hb_185437_010 Hb_185437_010 Hb_160950_010--Hb_185437_010 Hb_009083_020--Hb_002163_070 Hb_009083_020--Hb_010252_010 Hb_009083_020--Hb_000248_080 Hb_137862_020 Hb_137862_020 Hb_009083_020--Hb_137862_020 Hb_009083_020--Hb_039440_010 Hb_010252_010--Hb_002163_070 Hb_119583_030 Hb_119583_030 Hb_010252_010--Hb_119583_030 Hb_000025_800 Hb_000025_800 Hb_010252_010--Hb_000025_800 Hb_010252_010--Hb_185437_010 Hb_002163_070--Hb_137862_020 Hb_002163_070--Hb_119583_030 Hb_002163_070--Hb_000248_080 Hb_039440_010--Hb_185437_010 Hb_001518_050 Hb_001518_050 Hb_039440_010--Hb_001518_050 Hb_039440_010--Hb_010252_010 Hb_000072_010 Hb_000072_010 Hb_039440_010--Hb_000072_010 Hb_136973_020 Hb_136973_020 Hb_000248_080--Hb_136973_020 Hb_000248_080--Hb_137862_020 Hb_005928_010 Hb_005928_010 Hb_000248_080--Hb_005928_010 Hb_185437_010--Hb_001518_050 Hb_185437_010--Hb_000025_800 Hb_185437_010--Hb_119583_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0533499 0.0845251 0.117704 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis