Hb_161010_010

Information

Type -
Description -
Location Contig161010: 13-876
Sequence    

Annotation

kegg
ID cmo:103496653
description uncharacterized LOC103496653
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID C7J7N6
description Os10g0357350 protein OS=Oryza sativa subsp. japonica GN=Os10g0357350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161010_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_187677_010 0.2612427199 - - -
3 Hb_000008_060 0.2613083996 - - protein binding protein, putative [Ricinus communis]
4 Hb_000700_080 0.2635024846 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002527_050 0.264035716 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
6 Hb_001616_110 0.2696142229 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
7 Hb_042202_060 0.2715321658 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
8 Hb_005227_040 0.2745551734 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]
9 Hb_001789_140 0.275673476 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Citrus sinensis]
10 Hb_000336_230 0.2812867847 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa007609mg [Prunus persica]
11 Hb_031091_030 0.2818678978 - - hypothetical protein OsI_25921 [Oryza sativa Indica Group]
12 Hb_000649_180 0.2837659209 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
13 Hb_002659_030 0.2842434126 - - copper transport protein atox1, putative [Ricinus communis]
14 Hb_012092_090 0.2843359762 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X2 [Jatropha curcas]
15 Hb_003680_140 0.2847185101 - - PREDICTED: uncharacterized protein LOC105121770 [Populus euphratica]
16 Hb_005731_150 0.285643291 - - PREDICTED: uncharacterized protein LOC105630360 [Jatropha curcas]
17 Hb_002774_110 0.2876074092 - - heat shock protein binding protein, putative [Ricinus communis]
18 Hb_024468_010 0.290596108 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
19 Hb_012404_080 0.2930966289 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
20 Hb_001975_030 0.2933241834 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]

Gene co-expression network

sample Hb_161010_010 Hb_161010_010 Hb_187677_010 Hb_187677_010 Hb_161010_010--Hb_187677_010 Hb_000008_060 Hb_000008_060 Hb_161010_010--Hb_000008_060 Hb_000700_080 Hb_000700_080 Hb_161010_010--Hb_000700_080 Hb_002527_050 Hb_002527_050 Hb_161010_010--Hb_002527_050 Hb_001616_110 Hb_001616_110 Hb_161010_010--Hb_001616_110 Hb_042202_060 Hb_042202_060 Hb_161010_010--Hb_042202_060 Hb_000327_370 Hb_000327_370 Hb_187677_010--Hb_000327_370 Hb_000364_190 Hb_000364_190 Hb_187677_010--Hb_000364_190 Hb_012565_040 Hb_012565_040 Hb_187677_010--Hb_012565_040 Hb_002659_030 Hb_002659_030 Hb_187677_010--Hb_002659_030 Hb_003878_220 Hb_003878_220 Hb_187677_010--Hb_003878_220 Hb_003226_200 Hb_003226_200 Hb_000008_060--Hb_003226_200 Hb_003778_020 Hb_003778_020 Hb_000008_060--Hb_003778_020 Hb_000622_060 Hb_000622_060 Hb_000008_060--Hb_000622_060 Hb_000130_200 Hb_000130_200 Hb_000008_060--Hb_000130_200 Hb_000115_360 Hb_000115_360 Hb_000008_060--Hb_000115_360 Hb_000849_120 Hb_000849_120 Hb_000008_060--Hb_000849_120 Hb_005489_070 Hb_005489_070 Hb_000700_080--Hb_005489_070 Hb_000656_310 Hb_000656_310 Hb_000700_080--Hb_000656_310 Hb_009615_120 Hb_009615_120 Hb_000700_080--Hb_009615_120 Hb_001117_130 Hb_001117_130 Hb_000700_080--Hb_001117_130 Hb_000700_080--Hb_001616_110 Hb_002343_010 Hb_002343_010 Hb_000700_080--Hb_002343_010 Hb_000649_180 Hb_000649_180 Hb_002527_050--Hb_000649_180 Hb_002527_050--Hb_012565_040 Hb_000011_420 Hb_000011_420 Hb_002527_050--Hb_000011_420 Hb_002170_020 Hb_002170_020 Hb_002527_050--Hb_002170_020 Hb_002291_020 Hb_002291_020 Hb_002527_050--Hb_002291_020 Hb_009193_100 Hb_009193_100 Hb_002527_050--Hb_009193_100 Hb_027654_080 Hb_027654_080 Hb_001616_110--Hb_027654_080 Hb_001616_110--Hb_002343_010 Hb_002766_050 Hb_002766_050 Hb_001616_110--Hb_002766_050 Hb_000340_290 Hb_000340_290 Hb_001616_110--Hb_000340_290 Hb_000920_130 Hb_000920_130 Hb_001616_110--Hb_000920_130 Hb_001959_120 Hb_001959_120 Hb_001616_110--Hb_001959_120 Hb_002876_270 Hb_002876_270 Hb_042202_060--Hb_002876_270 Hb_001863_020 Hb_001863_020 Hb_042202_060--Hb_001863_020 Hb_006816_470 Hb_006816_470 Hb_042202_060--Hb_006816_470 Hb_001138_060 Hb_001138_060 Hb_042202_060--Hb_001138_060 Hb_005167_020 Hb_005167_020 Hb_042202_060--Hb_005167_020 Hb_010422_070 Hb_010422_070 Hb_042202_060--Hb_010422_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0467626 0.0210034 0.0464727 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0504719 0.0916084 0.0612091 0.101691

CAGE analysis