Hb_161072_010

Information

Type -
Description -
Location Contig161072: 1405-3372
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161072_010 0.0 - - -
2 Hb_000637_120 0.2067126004 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
3 Hb_163837_010 0.2405004839 - - PREDICTED: putative F-box protein At1g65770 [Eucalyptus grandis]
4 Hb_001124_040 0.267982469 - - PREDICTED: uncharacterized protein LOC103413595 [Malus domestica]
5 Hb_037226_010 0.2751311802 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
6 Hb_138652_010 0.2795247219 - - hypothetical protein JCGZ_13474 [Jatropha curcas]
7 Hb_130194_010 0.2803554854 - - PREDICTED: uncharacterized protein LOC104115665 [Nicotiana tomentosiformis]
8 Hb_000304_060 0.2812523778 transcription factor TF Family: GRAS hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
9 Hb_001799_080 0.2882066569 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
10 Hb_001856_010 0.3054416345 - - DNA binding protein, putative [Ricinus communis]
11 Hb_002391_230 0.3067407692 - - hypothetical protein RCOM_0745080 [Ricinus communis]
12 Hb_012522_010 0.3095042137 - - hypothetical protein VITISV_003261 [Vitis vinifera]
13 Hb_149539_010 0.3121183707 - - -
14 Hb_186982_010 0.314790626 - - PREDICTED: uncharacterized protein LOC104120222 [Nicotiana tomentosiformis]
15 Hb_003069_020 0.315209994 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000512_070 0.3156994147 - - PREDICTED: GDSL esterase/lipase At1g71250-like [Jatropha curcas]
17 Hb_000436_010 0.3199918003 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
18 Hb_001766_100 0.32772304 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000000_100 0.3280153101 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
20 Hb_097968_010 0.3295263143 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]

Gene co-expression network

sample Hb_161072_010 Hb_161072_010 Hb_000637_120 Hb_000637_120 Hb_161072_010--Hb_000637_120 Hb_163837_010 Hb_163837_010 Hb_161072_010--Hb_163837_010 Hb_001124_040 Hb_001124_040 Hb_161072_010--Hb_001124_040 Hb_037226_010 Hb_037226_010 Hb_161072_010--Hb_037226_010 Hb_138652_010 Hb_138652_010 Hb_161072_010--Hb_138652_010 Hb_130194_010 Hb_130194_010 Hb_161072_010--Hb_130194_010 Hb_149539_010 Hb_149539_010 Hb_000637_120--Hb_149539_010 Hb_006816_450 Hb_006816_450 Hb_000637_120--Hb_006816_450 Hb_000436_010 Hb_000436_010 Hb_000637_120--Hb_000436_010 Hb_001100_010 Hb_001100_010 Hb_000637_120--Hb_001100_010 Hb_001799_080 Hb_001799_080 Hb_000637_120--Hb_001799_080 Hb_012522_010 Hb_012522_010 Hb_163837_010--Hb_012522_010 Hb_000304_060 Hb_000304_060 Hb_163837_010--Hb_000304_060 Hb_000045_150 Hb_000045_150 Hb_163837_010--Hb_000045_150 Hb_163837_010--Hb_000637_120 Hb_012760_020 Hb_012760_020 Hb_163837_010--Hb_012760_020 Hb_011056_020 Hb_011056_020 Hb_001124_040--Hb_011056_020 Hb_001124_040--Hb_000045_150 Hb_001124_040--Hb_012522_010 Hb_001014_120 Hb_001014_120 Hb_001124_040--Hb_001014_120 Hb_001008_040 Hb_001008_040 Hb_001124_040--Hb_001008_040 Hb_008948_040 Hb_008948_040 Hb_037226_010--Hb_008948_040 Hb_003906_090 Hb_003906_090 Hb_037226_010--Hb_003906_090 Hb_007075_050 Hb_007075_050 Hb_037226_010--Hb_007075_050 Hb_037226_010--Hb_130194_010 Hb_101808_010 Hb_101808_010 Hb_037226_010--Hb_101808_010 Hb_004690_040 Hb_004690_040 Hb_037226_010--Hb_004690_040 Hb_011063_020 Hb_011063_020 Hb_138652_010--Hb_011063_020 Hb_000392_390 Hb_000392_390 Hb_138652_010--Hb_000392_390 Hb_138652_010--Hb_000304_060 Hb_005699_080 Hb_005699_080 Hb_138652_010--Hb_005699_080 Hb_153365_010 Hb_153365_010 Hb_138652_010--Hb_153365_010 Hb_001523_020 Hb_001523_020 Hb_130194_010--Hb_001523_020 Hb_000512_070 Hb_000512_070 Hb_130194_010--Hb_000512_070 Hb_002513_030 Hb_002513_030 Hb_130194_010--Hb_002513_030 Hb_032496_010 Hb_032496_010 Hb_130194_010--Hb_032496_010 Hb_036311_020 Hb_036311_020 Hb_130194_010--Hb_036311_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.131558 0.116264 0 0 0.116172 0.0358317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0733622 0.517128 0.209963 0

CAGE analysis