Hb_161072_030

Information

Type -
Description -
Location Contig161072: 11760-13103
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08080g
description hypothetical protein
nr
ID XP_012078277.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
swissprot
ID Q1PFC5
description Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1
trembl
ID A0A067KCU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14453: 11216-12131 , PASA_asmbl_14454: 11443-11867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161072_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
2 Hb_002349_050 0.0883758881 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
3 Hb_002524_040 0.0915094097 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
4 Hb_005946_170 0.0947703612 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
5 Hb_002813_010 0.1060633726 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
6 Hb_030565_090 0.1061364874 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
7 Hb_004543_030 0.1065433799 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
8 Hb_000139_090 0.1099323984 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
9 Hb_000363_130 0.1115434589 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
10 Hb_001946_300 0.1130918112 - - PREDICTED: F-box protein At-B [Jatropha curcas]
11 Hb_015026_050 0.1155260328 - - XPA-binding protein, putative [Ricinus communis]
12 Hb_000813_100 0.1156454652 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
13 Hb_011465_030 0.1159548665 - - PREDICTED: B2 protein [Jatropha curcas]
14 Hb_004970_150 0.1166224141 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
15 Hb_002477_150 0.116715408 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
16 Hb_006316_070 0.116967155 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
17 Hb_003206_030 0.1174931612 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
18 Hb_015475_020 0.1175860166 - - importin beta-1, putative [Ricinus communis]
19 Hb_001769_010 0.1177644371 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006847_040 0.1178920978 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_161072_030 Hb_161072_030 Hb_002349_050 Hb_002349_050 Hb_161072_030--Hb_002349_050 Hb_002524_040 Hb_002524_040 Hb_161072_030--Hb_002524_040 Hb_005946_170 Hb_005946_170 Hb_161072_030--Hb_005946_170 Hb_002813_010 Hb_002813_010 Hb_161072_030--Hb_002813_010 Hb_030565_090 Hb_030565_090 Hb_161072_030--Hb_030565_090 Hb_004543_030 Hb_004543_030 Hb_161072_030--Hb_004543_030 Hb_015475_020 Hb_015475_020 Hb_002349_050--Hb_015475_020 Hb_015026_050 Hb_015026_050 Hb_002349_050--Hb_015026_050 Hb_000813_100 Hb_000813_100 Hb_002349_050--Hb_000813_100 Hb_133047_010 Hb_133047_010 Hb_002349_050--Hb_133047_010 Hb_001221_160 Hb_001221_160 Hb_002349_050--Hb_001221_160 Hb_001946_300 Hb_001946_300 Hb_002349_050--Hb_001946_300 Hb_002524_040--Hb_004543_030 Hb_000139_090 Hb_000139_090 Hb_002524_040--Hb_000139_090 Hb_007576_120 Hb_007576_120 Hb_002524_040--Hb_007576_120 Hb_002524_040--Hb_030565_090 Hb_001247_070 Hb_001247_070 Hb_002524_040--Hb_001247_070 Hb_034243_020 Hb_034243_020 Hb_002524_040--Hb_034243_020 Hb_005946_170--Hb_002813_010 Hb_002477_150 Hb_002477_150 Hb_005946_170--Hb_002477_150 Hb_001059_100 Hb_001059_100 Hb_005946_170--Hb_001059_100 Hb_148209_020 Hb_148209_020 Hb_005946_170--Hb_148209_020 Hb_005946_170--Hb_000813_100 Hb_005946_170--Hb_004543_030 Hb_001080_270 Hb_001080_270 Hb_002813_010--Hb_001080_270 Hb_000421_120 Hb_000421_120 Hb_002813_010--Hb_000421_120 Hb_000865_080 Hb_000865_080 Hb_002813_010--Hb_000865_080 Hb_002813_010--Hb_002524_040 Hb_004162_280 Hb_004162_280 Hb_002813_010--Hb_004162_280 Hb_000997_030 Hb_000997_030 Hb_030565_090--Hb_000997_030 Hb_000363_130 Hb_000363_130 Hb_030565_090--Hb_000363_130 Hb_000264_100 Hb_000264_100 Hb_030565_090--Hb_000264_100 Hb_030565_090--Hb_034243_020 Hb_033883_060 Hb_033883_060 Hb_030565_090--Hb_033883_060 Hb_031042_070 Hb_031042_070 Hb_030565_090--Hb_031042_070 Hb_004543_030--Hb_034243_020 Hb_004543_030--Hb_007576_120 Hb_004718_010 Hb_004718_010 Hb_004543_030--Hb_004718_010 Hb_004543_030--Hb_000997_030 Hb_010315_090 Hb_010315_090 Hb_004543_030--Hb_010315_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.6003 3.76692 0.664571 0.745722 2.51909 3.45507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.20621 1.17216 1.25276 0.747594 1.51058

CAGE analysis