Hb_161072_040

Information

Type -
Description -
Location Contig161072: 15109-20225
Sequence    

Annotation

kegg
ID rcu:RCOM_0562940
description replication factor C / DNA polymerase III gamma-tau subunit, putative (EC:2.7.7.7)
nr
ID XP_012078273.1
description PREDICTED: replication factor C subunit 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9FXM3
description Replication factor C subunit 2 OS=Oryza sativa subsp. japonica GN=RFC2 PE=2 SV=1
trembl
ID A0A067K9C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12118 PE=4 SV=1
Gene Ontology
ID GO:0003677
description replication factor c subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14455: 15020-19721 , PASA_asmbl_14457: 19501-19926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161072_040 0.0 - - PREDICTED: replication factor C subunit 2 isoform X1 [Jatropha curcas]
2 Hb_010584_030 0.1563327349 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
3 Hb_004324_250 0.1681897965 - - PREDICTED: protein IWS1 homolog A isoform X1 [Jatropha curcas]
4 Hb_000599_120 0.1727528488 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
5 Hb_010261_020 0.1745068001 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
6 Hb_001329_230 0.1756191755 - - PREDICTED: peptide chain release factor 1-like, mitochondrial [Jatropha curcas]
7 Hb_002551_020 0.1806173555 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
8 Hb_011794_060 0.1820257923 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_002872_020 0.1831743398 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_007447_010 0.1839597378 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
11 Hb_002284_300 0.1848410072 - - -
12 Hb_060809_010 0.18610819 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
13 Hb_005941_010 0.186474622 - - PREDICTED: protein SAND [Jatropha curcas]
14 Hb_000556_020 0.1866763302 - - PREDICTED: terminal uridylyltransferase 7 [Jatropha curcas]
15 Hb_003673_060 0.1867784329 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
16 Hb_013405_130 0.1898958531 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
17 Hb_001135_160 0.1910404496 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
18 Hb_003602_040 0.1912831317 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
19 Hb_002659_140 0.1920062886 - - hypothetical protein JCGZ_08031 [Jatropha curcas]
20 Hb_055590_010 0.1922658246 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_161072_040 Hb_161072_040 Hb_010584_030 Hb_010584_030 Hb_161072_040--Hb_010584_030 Hb_004324_250 Hb_004324_250 Hb_161072_040--Hb_004324_250 Hb_000599_120 Hb_000599_120 Hb_161072_040--Hb_000599_120 Hb_010261_020 Hb_010261_020 Hb_161072_040--Hb_010261_020 Hb_001329_230 Hb_001329_230 Hb_161072_040--Hb_001329_230 Hb_002551_020 Hb_002551_020 Hb_161072_040--Hb_002551_020 Hb_002835_410 Hb_002835_410 Hb_010584_030--Hb_002835_410 Hb_001135_160 Hb_001135_160 Hb_010584_030--Hb_001135_160 Hb_010584_030--Hb_004324_250 Hb_000556_080 Hb_000556_080 Hb_010584_030--Hb_000556_080 Hb_001604_010 Hb_001604_010 Hb_010584_030--Hb_001604_010 Hb_060809_010 Hb_060809_010 Hb_010584_030--Hb_060809_010 Hb_002079_010 Hb_002079_010 Hb_004324_250--Hb_002079_010 Hb_001019_060 Hb_001019_060 Hb_004324_250--Hb_001019_060 Hb_007426_030 Hb_007426_030 Hb_004324_250--Hb_007426_030 Hb_000483_200 Hb_000483_200 Hb_004324_250--Hb_000483_200 Hb_006400_060 Hb_006400_060 Hb_004324_250--Hb_006400_060 Hb_002391_110 Hb_002391_110 Hb_000599_120--Hb_002391_110 Hb_000057_060 Hb_000057_060 Hb_000599_120--Hb_000057_060 Hb_000984_180 Hb_000984_180 Hb_000599_120--Hb_000984_180 Hb_000365_360 Hb_000365_360 Hb_000599_120--Hb_000365_360 Hb_000696_110 Hb_000696_110 Hb_000599_120--Hb_000696_110 Hb_127979_010 Hb_127979_010 Hb_000599_120--Hb_127979_010 Hb_005288_120 Hb_005288_120 Hb_010261_020--Hb_005288_120 Hb_013405_130 Hb_013405_130 Hb_010261_020--Hb_013405_130 Hb_010298_010 Hb_010298_010 Hb_010261_020--Hb_010298_010 Hb_009558_020 Hb_009558_020 Hb_010261_020--Hb_009558_020 Hb_000671_100 Hb_000671_100 Hb_010261_020--Hb_000671_100 Hb_000700_090 Hb_000700_090 Hb_010261_020--Hb_000700_090 Hb_003602_040 Hb_003602_040 Hb_001329_230--Hb_003602_040 Hb_006663_100 Hb_006663_100 Hb_001329_230--Hb_006663_100 Hb_009775_050 Hb_009775_050 Hb_001329_230--Hb_009775_050 Hb_076787_010 Hb_076787_010 Hb_001329_230--Hb_076787_010 Hb_022137_060 Hb_022137_060 Hb_001329_230--Hb_022137_060 Hb_009118_010 Hb_009118_010 Hb_001329_230--Hb_009118_010 Hb_011671_220 Hb_011671_220 Hb_002551_020--Hb_011671_220 Hb_168773_010 Hb_168773_010 Hb_002551_020--Hb_168773_010 Hb_004109_190 Hb_004109_190 Hb_002551_020--Hb_004109_190 Hb_000029_020 Hb_000029_020 Hb_002551_020--Hb_000029_020 Hb_002496_050 Hb_002496_050 Hb_002551_020--Hb_002496_050 Hb_000061_320 Hb_000061_320 Hb_002551_020--Hb_000061_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6832 1.28996 2.47554 1.01526 39.1626 37.1465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.9178 14.7448 21.3761 23.7909 12.9358

CAGE analysis