Hb_161175_010

Information

Type -
Description -
Location Contig161175: 683-2856
Sequence    

Annotation

kegg
ID rcu:RCOM_1429290
description vesicle-associated membrane protein, putative
nr
ID XP_012089164.1
description PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
swissprot
ID B9DHD7
description Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1
trembl
ID A0A067JI21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23429 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 2-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161175_010 0.0 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
2 Hb_000125_210 0.0776554932 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
3 Hb_000175_030 0.0814705247 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
4 Hb_019113_020 0.0819621261 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
5 Hb_000705_290 0.0861583398 - - C-4 methyl sterol oxidase, putative [Ricinus communis]
6 Hb_003849_150 0.0900676583 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
7 Hb_000673_020 0.0933674938 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
8 Hb_001284_030 0.0958072975 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
9 Hb_002918_290 0.0972711843 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
10 Hb_002503_020 0.0984090837 - - Phosphatase 2C family protein, putative [Theobroma cacao]
11 Hb_000318_160 0.0986346439 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
12 Hb_010883_050 0.0998903406 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
13 Hb_011512_040 0.1002673713 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
14 Hb_027654_050 0.1012275528 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
15 Hb_003050_250 0.1025260148 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
16 Hb_000096_150 0.1026710947 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
17 Hb_003880_030 0.103206011 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
18 Hb_068056_030 0.1040638876 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
19 Hb_003050_280 0.1050975154 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
20 Hb_003349_080 0.108218175 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]

Gene co-expression network

sample Hb_161175_010 Hb_161175_010 Hb_000125_210 Hb_000125_210 Hb_161175_010--Hb_000125_210 Hb_000175_030 Hb_000175_030 Hb_161175_010--Hb_000175_030 Hb_019113_020 Hb_019113_020 Hb_161175_010--Hb_019113_020 Hb_000705_290 Hb_000705_290 Hb_161175_010--Hb_000705_290 Hb_003849_150 Hb_003849_150 Hb_161175_010--Hb_003849_150 Hb_000673_020 Hb_000673_020 Hb_161175_010--Hb_000673_020 Hb_000125_210--Hb_000673_020 Hb_000096_150 Hb_000096_150 Hb_000125_210--Hb_000096_150 Hb_000318_160 Hb_000318_160 Hb_000125_210--Hb_000318_160 Hb_003349_080 Hb_003349_080 Hb_000125_210--Hb_003349_080 Hb_000125_210--Hb_000175_030 Hb_000175_030--Hb_000673_020 Hb_011021_040 Hb_011021_040 Hb_000175_030--Hb_011021_040 Hb_003880_030 Hb_003880_030 Hb_000175_030--Hb_003880_030 Hb_003462_120 Hb_003462_120 Hb_000175_030--Hb_003462_120 Hb_007192_100 Hb_007192_100 Hb_000175_030--Hb_007192_100 Hb_003050_250 Hb_003050_250 Hb_019113_020--Hb_003050_250 Hb_002503_020 Hb_002503_020 Hb_019113_020--Hb_002503_020 Hb_019113_020--Hb_000125_210 Hb_004125_040 Hb_004125_040 Hb_019113_020--Hb_004125_040 Hb_019113_020--Hb_000318_160 Hb_006442_020 Hb_006442_020 Hb_000705_290--Hb_006442_020 Hb_001136_060 Hb_001136_060 Hb_000705_290--Hb_001136_060 Hb_000272_140 Hb_000272_140 Hb_000705_290--Hb_000272_140 Hb_000042_200 Hb_000042_200 Hb_000705_290--Hb_000042_200 Hb_001284_030 Hb_001284_030 Hb_000705_290--Hb_001284_030 Hb_001329_150 Hb_001329_150 Hb_003849_150--Hb_001329_150 Hb_011512_040 Hb_011512_040 Hb_003849_150--Hb_011512_040 Hb_010883_050 Hb_010883_050 Hb_003849_150--Hb_010883_050 Hb_006831_120 Hb_006831_120 Hb_003849_150--Hb_006831_120 Hb_000340_570 Hb_000340_570 Hb_003849_150--Hb_000340_570 Hb_013405_140 Hb_013405_140 Hb_000673_020--Hb_013405_140 Hb_000673_020--Hb_003880_030 Hb_027654_050 Hb_027654_050 Hb_000673_020--Hb_027654_050 Hb_000934_190 Hb_000934_190 Hb_000673_020--Hb_000934_190 Hb_002016_080 Hb_002016_080 Hb_000673_020--Hb_002016_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.29259 5.82886 10.5578 19.9888 6.27761 10.6388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.4566 33.2305 29.1514 12.219 25.299

CAGE analysis