Hb_161346_010

Information

Type -
Description -
Location Contig161346: 128-5428
Sequence    

Annotation

kegg
ID tcc:TCM_026075
description RmlC-like cupins superfamily protein
nr
ID XP_011012323.1
description PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
swissprot
ID Q9SFF9
description Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1
trembl
ID A0A067JLV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23601 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 1 member 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14460: 3652-4692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161346_010 0.0 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
2 Hb_182831_020 0.063023301 - - multidrug resistance pump, putative [Ricinus communis]
3 Hb_003171_070 0.0999285414 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
4 Hb_131029_010 0.1121274924 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
5 Hb_000676_380 0.1210930676 - - cytochrome P450 family protein [Populus trichocarpa]
6 Hb_002413_030 0.128595476 - - sulfate transporter, putative [Ricinus communis]
7 Hb_003789_020 0.1299438314 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
8 Hb_081282_010 0.1358681707 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
9 Hb_000046_250 0.1366098033 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003177_100 0.1394481332 - - PREDICTED: auxin-induced protein 6B [Jatropha curcas]
11 Hb_011139_010 0.1398903425 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_009780_110 0.1399328323 - - PREDICTED: protein RSI-1 [Cicer arietinum]
13 Hb_081191_010 0.1412128191 - - PREDICTED: pathogenesis-related protein PR-1-like [Jatropha curcas]
14 Hb_001596_030 0.1432643728 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
15 Hb_020805_110 0.145139179 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
16 Hb_003090_230 0.1490802517 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000098_210 0.1493167247 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
18 Hb_000429_030 0.1549063043 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_014865_010 0.1612636545 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]
20 Hb_009711_040 0.1617441257 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]

Gene co-expression network

sample Hb_161346_010 Hb_161346_010 Hb_182831_020 Hb_182831_020 Hb_161346_010--Hb_182831_020 Hb_003171_070 Hb_003171_070 Hb_161346_010--Hb_003171_070 Hb_131029_010 Hb_131029_010 Hb_161346_010--Hb_131029_010 Hb_000676_380 Hb_000676_380 Hb_161346_010--Hb_000676_380 Hb_002413_030 Hb_002413_030 Hb_161346_010--Hb_002413_030 Hb_003789_020 Hb_003789_020 Hb_161346_010--Hb_003789_020 Hb_011139_010 Hb_011139_010 Hb_182831_020--Hb_011139_010 Hb_182831_020--Hb_003789_020 Hb_182831_020--Hb_003171_070 Hb_182831_020--Hb_131029_010 Hb_182831_020--Hb_000676_380 Hb_003171_070--Hb_000676_380 Hb_006314_020 Hb_006314_020 Hb_003171_070--Hb_006314_020 Hb_001856_150 Hb_001856_150 Hb_003171_070--Hb_001856_150 Hb_003371_040 Hb_003371_040 Hb_003171_070--Hb_003371_040 Hb_000429_030 Hb_000429_030 Hb_003171_070--Hb_000429_030 Hb_000670_080 Hb_000670_080 Hb_131029_010--Hb_000670_080 Hb_082864_010 Hb_082864_010 Hb_131029_010--Hb_082864_010 Hb_000166_010 Hb_000166_010 Hb_131029_010--Hb_000166_010 Hb_001544_010 Hb_001544_010 Hb_131029_010--Hb_001544_010 Hb_003090_230 Hb_003090_230 Hb_000676_380--Hb_003090_230 Hb_020805_110 Hb_020805_110 Hb_000676_380--Hb_020805_110 Hb_000676_380--Hb_001856_150 Hb_004875_040 Hb_004875_040 Hb_000676_380--Hb_004875_040 Hb_009711_040 Hb_009711_040 Hb_000676_380--Hb_009711_040 Hb_007007_020 Hb_007007_020 Hb_002413_030--Hb_007007_020 Hb_082733_010 Hb_082733_010 Hb_002413_030--Hb_082733_010 Hb_000046_250 Hb_000046_250 Hb_002413_030--Hb_000046_250 Hb_023714_010 Hb_023714_010 Hb_002413_030--Hb_023714_010 Hb_041063_010 Hb_041063_010 Hb_002413_030--Hb_041063_010 Hb_003057_040 Hb_003057_040 Hb_002413_030--Hb_003057_040 Hb_003789_020--Hb_011139_010 Hb_008727_030 Hb_008727_030 Hb_003789_020--Hb_008727_030 Hb_030394_050 Hb_030394_050 Hb_003789_020--Hb_030394_050 Hb_001360_060 Hb_001360_060 Hb_003789_020--Hb_001360_060 Hb_005144_180 Hb_005144_180 Hb_003789_020--Hb_005144_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.82073 5.30614 75.2544 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 63.4453 1.11733

CAGE analysis