Hb_161881_010

Information

Type -
Description -
Location Contig161881: 239-2200
Sequence    

Annotation

kegg
ID rcu:RCOM_0730390
description laccase, putative (EC:1.10.3.3)
nr
ID XP_002520425.1
description laccase, putative [Ricinus communis]
swissprot
ID O80434
description Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2
trembl
ID B9S356
description Laccase OS=Ricinus communis GN=RCOM_0730390 PE=3 SV=1
Gene Ontology
ID GO:0005507
description laccase diphenol oxidase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161881_010 0.0 - - laccase, putative [Ricinus communis]
2 Hb_002010_010 0.065892909 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
3 Hb_012528_040 0.066277329 - - -
4 Hb_000123_070 0.0815874756 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
5 Hb_000922_110 0.0894948733 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
6 Hb_003732_030 0.0973577538 - - gibberellin 20-oxidase, putative [Ricinus communis]
7 Hb_004030_010 0.0997755207 - - hypothetical protein CICLE_v10013050mg [Citrus clementina]
8 Hb_005194_050 0.106423909 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
9 Hb_171685_070 0.1070977844 - - -
10 Hb_000208_220 0.1113837637 - - -
11 Hb_000776_120 0.1113997346 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
12 Hb_011689_070 0.1138560346 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
13 Hb_027638_010 0.1150264514 - - Protein KES1, putative [Ricinus communis]
14 Hb_000349_150 0.1170928712 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
15 Hb_001001_130 0.1207031606 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
16 Hb_007101_090 0.1215118216 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
17 Hb_000336_130 0.1233916799 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]
18 Hb_101462_010 0.1245927729 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
19 Hb_001508_010 0.1312345685 - - conserved hypothetical protein [Ricinus communis]
20 Hb_159308_010 0.1316225286 - - ribosomal protein S4 [Cercidiphyllum japonicum]

Gene co-expression network

sample Hb_161881_010 Hb_161881_010 Hb_002010_010 Hb_002010_010 Hb_161881_010--Hb_002010_010 Hb_012528_040 Hb_012528_040 Hb_161881_010--Hb_012528_040 Hb_000123_070 Hb_000123_070 Hb_161881_010--Hb_000123_070 Hb_000922_110 Hb_000922_110 Hb_161881_010--Hb_000922_110 Hb_003732_030 Hb_003732_030 Hb_161881_010--Hb_003732_030 Hb_004030_010 Hb_004030_010 Hb_161881_010--Hb_004030_010 Hb_002010_010--Hb_003732_030 Hb_007101_090 Hb_007101_090 Hb_002010_010--Hb_007101_090 Hb_000336_130 Hb_000336_130 Hb_002010_010--Hb_000336_130 Hb_001999_330 Hb_001999_330 Hb_002010_010--Hb_001999_330 Hb_002010_010--Hb_004030_010 Hb_012528_040--Hb_000123_070 Hb_001001_130 Hb_001001_130 Hb_012528_040--Hb_001001_130 Hb_012528_040--Hb_002010_010 Hb_000135_080 Hb_000135_080 Hb_012528_040--Hb_000135_080 Hb_014109_020 Hb_014109_020 Hb_012528_040--Hb_014109_020 Hb_101462_010 Hb_101462_010 Hb_000123_070--Hb_101462_010 Hb_007595_030 Hb_007595_030 Hb_000123_070--Hb_007595_030 Hb_000373_140 Hb_000373_140 Hb_000123_070--Hb_000373_140 Hb_000938_050 Hb_000938_050 Hb_000123_070--Hb_000938_050 Hb_000349_150 Hb_000349_150 Hb_000922_110--Hb_000349_150 Hb_011689_070 Hb_011689_070 Hb_000922_110--Hb_011689_070 Hb_004150_020 Hb_004150_020 Hb_000922_110--Hb_004150_020 Hb_006040_090 Hb_006040_090 Hb_000922_110--Hb_006040_090 Hb_004855_030 Hb_004855_030 Hb_000922_110--Hb_004855_030 Hb_001210_110 Hb_001210_110 Hb_000922_110--Hb_001210_110 Hb_003732_030--Hb_004030_010 Hb_003732_030--Hb_011689_070 Hb_000776_120 Hb_000776_120 Hb_003732_030--Hb_000776_120 Hb_001775_010 Hb_001775_010 Hb_003732_030--Hb_001775_010 Hb_003732_030--Hb_000922_110 Hb_004030_010--Hb_000776_120 Hb_004030_010--Hb_011689_070 Hb_008864_050 Hb_008864_050 Hb_004030_010--Hb_008864_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.166145 0.31115 0.129621 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0358831 3.9705

CAGE analysis