Hb_162094_010

Information

Type -
Description -
Location Contig162094: 4294-5622
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00076
description rpoA; RNA polymerase alpha subunit
nr
ID YP_004327694.1
description RNA polymerase alpha subunit [Hevea brasiliensis]
swissprot
ID A4GYU3
description DNA-directed RNA polymerase subunit alpha OS=Populus trichocarpa GN=rpoA PE=3 SV=1
trembl
ID F2X0E8
description DNA-directed RNA polymerase subunit alpha OS=Hevea brasiliensis GN=rpoA PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162094_010 0.0 - - RNA polymerase alpha subunit [Hevea brasiliensis]
2 Hb_003963_040 0.129883955 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
3 Hb_001338_150 0.1434347794 - - hypothetical chloroplast RF1 [Dillenia indica]
4 Hb_001338_160 0.1483862228 - - NADH dehydrogenase subunit 5 [Hevea brasiliensis]
5 Hb_003032_090 0.1518743988 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
6 Hb_001155_020 0.1633169337 - - Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
7 Hb_003693_060 0.1669782988 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
8 Hb_005399_050 0.1683227626 - - DNA-directed RNA polymerase subunit beta [Glycine soja]
9 Hb_004880_090 0.1861455287 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
10 Hb_007504_040 0.1874906641 - - hypothetical chloroplast RF2 [Fragaria iinumae]
11 Hb_005399_040 0.1927677465 - - RNA polymerase beta subunit [Hevea brasiliensis]
12 Hb_103465_010 0.1958984958 - - RNA polymerase beta subunit [Hevea brasiliensis]
13 Hb_062192_010 0.1959535742 - - -
14 Hb_185274_010 0.2014941278 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
15 Hb_027380_240 0.2016645725 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic [Jatropha curcas]
16 Hb_185274_020 0.2056102161 - - Ycf2 (chloroplast) [Andrographis paniculata]
17 Hb_071126_010 0.2068287421 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_002835_090 0.2094109344 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
19 Hb_031194_010 0.2094553447 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
20 Hb_000156_240 0.2150821829 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]

Gene co-expression network

sample Hb_162094_010 Hb_162094_010 Hb_003963_040 Hb_003963_040 Hb_162094_010--Hb_003963_040 Hb_001338_150 Hb_001338_150 Hb_162094_010--Hb_001338_150 Hb_001338_160 Hb_001338_160 Hb_162094_010--Hb_001338_160 Hb_003032_090 Hb_003032_090 Hb_162094_010--Hb_003032_090 Hb_001155_020 Hb_001155_020 Hb_162094_010--Hb_001155_020 Hb_003693_060 Hb_003693_060 Hb_162094_010--Hb_003693_060 Hb_003963_040--Hb_001338_150 Hb_003963_040--Hb_003032_090 Hb_003963_040--Hb_001338_160 Hb_005399_040 Hb_005399_040 Hb_003963_040--Hb_005399_040 Hb_000156_240 Hb_000156_240 Hb_003963_040--Hb_000156_240 Hb_005399_050 Hb_005399_050 Hb_003963_040--Hb_005399_050 Hb_001338_150--Hb_003032_090 Hb_003693_030 Hb_003693_030 Hb_001338_150--Hb_003693_030 Hb_001338_150--Hb_001338_160 Hb_003693_020 Hb_003693_020 Hb_001338_150--Hb_003693_020 Hb_001338_150--Hb_000156_240 Hb_001338_160--Hb_001155_020 Hb_001338_160--Hb_003032_090 Hb_002835_090 Hb_002835_090 Hb_001338_160--Hb_002835_090 Hb_185274_020 Hb_185274_020 Hb_003032_090--Hb_185274_020 Hb_003032_090--Hb_000156_240 Hb_003032_090--Hb_002835_090 Hb_072212_010 Hb_072212_010 Hb_001155_020--Hb_072212_010 Hb_001155_020--Hb_003963_040 Hb_004611_040 Hb_004611_040 Hb_001155_020--Hb_004611_040 Hb_001155_020--Hb_002835_090 Hb_001155_020--Hb_001338_150 Hb_031194_010 Hb_031194_010 Hb_003693_060--Hb_031194_010 Hb_088080_040 Hb_088080_040 Hb_003693_060--Hb_088080_040 Hb_103465_010 Hb_103465_010 Hb_003693_060--Hb_103465_010 Hb_004811_010 Hb_004811_010 Hb_003693_060--Hb_004811_010 Hb_003693_060--Hb_000156_240 Hb_003693_060--Hb_003963_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.8239 0.840514 4.57181 0.233523 1.273 1.14722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0962848 0.0646551 21.1558

CAGE analysis