Hb_162150_010

Information

Type -
Description -
Location Contig162150: 2256-6036
Sequence    

Annotation

kegg
ID rcu:RCOM_0497300
description hypothetical protein
nr
ID XP_002527852.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q54R82
description Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2
trembl
ID B9SPD3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0497300 PE=4 SV=1
Gene Ontology
ID GO:0016772
description mitogen-activated protein kinase kinase kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14646: 2498-2797 , PASA_asmbl_14647: 2798-2993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162150_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004994_090 0.1173965902 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
3 Hb_005489_140 0.1190179114 - - PREDICTED: maspardin [Jatropha curcas]
4 Hb_049436_010 0.119425113 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
5 Hb_002344_060 0.1228323552 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
6 Hb_062416_010 0.1237627169 - - PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]
7 Hb_002874_090 0.1246162789 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
8 Hb_000009_330 0.1278827339 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
9 Hb_000059_020 0.1286843442 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
10 Hb_000631_120 0.1292919706 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
11 Hb_167234_010 0.1297581211 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
12 Hb_000213_120 0.1301913486 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000170_240 0.1307168097 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
14 Hb_077048_010 0.1313733309 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007811_050 0.1321822258 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
16 Hb_008790_020 0.1324199161 - - PREDICTED: uncharacterized protein LOC105638122 [Jatropha curcas]
17 Hb_004586_280 0.1342449728 - - PREDICTED: GEM-like protein 1 [Jatropha curcas]
18 Hb_000089_180 0.1344679595 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
19 Hb_000441_150 0.1372374511 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_004128_130 0.1372474075 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_162150_010 Hb_162150_010 Hb_004994_090 Hb_004994_090 Hb_162150_010--Hb_004994_090 Hb_005489_140 Hb_005489_140 Hb_162150_010--Hb_005489_140 Hb_049436_010 Hb_049436_010 Hb_162150_010--Hb_049436_010 Hb_002344_060 Hb_002344_060 Hb_162150_010--Hb_002344_060 Hb_062416_010 Hb_062416_010 Hb_162150_010--Hb_062416_010 Hb_002874_090 Hb_002874_090 Hb_162150_010--Hb_002874_090 Hb_000009_330 Hb_000009_330 Hb_004994_090--Hb_000009_330 Hb_000059_020 Hb_000059_020 Hb_004994_090--Hb_000059_020 Hb_001935_140 Hb_001935_140 Hb_004994_090--Hb_001935_140 Hb_000302_200 Hb_000302_200 Hb_004994_090--Hb_000302_200 Hb_000406_110 Hb_000406_110 Hb_004994_090--Hb_000406_110 Hb_008948_140 Hb_008948_140 Hb_004994_090--Hb_008948_140 Hb_107298_010 Hb_107298_010 Hb_005489_140--Hb_107298_010 Hb_025336_020 Hb_025336_020 Hb_005489_140--Hb_025336_020 Hb_089140_040 Hb_089140_040 Hb_005489_140--Hb_089140_040 Hb_001019_050 Hb_001019_050 Hb_005489_140--Hb_001019_050 Hb_083799_010 Hb_083799_010 Hb_005489_140--Hb_083799_010 Hb_008790_020 Hb_008790_020 Hb_005489_140--Hb_008790_020 Hb_001031_090 Hb_001031_090 Hb_049436_010--Hb_001031_090 Hb_004934_050 Hb_004934_050 Hb_049436_010--Hb_004934_050 Hb_000905_170 Hb_000905_170 Hb_049436_010--Hb_000905_170 Hb_000920_300 Hb_000920_300 Hb_049436_010--Hb_000920_300 Hb_002477_090 Hb_002477_090 Hb_049436_010--Hb_002477_090 Hb_119530_010 Hb_119530_010 Hb_049436_010--Hb_119530_010 Hb_000152_660 Hb_000152_660 Hb_002344_060--Hb_000152_660 Hb_001878_050 Hb_001878_050 Hb_002344_060--Hb_001878_050 Hb_007747_080 Hb_007747_080 Hb_002344_060--Hb_007747_080 Hb_000441_150 Hb_000441_150 Hb_002344_060--Hb_000441_150 Hb_015175_050 Hb_015175_050 Hb_002344_060--Hb_015175_050 Hb_011716_070 Hb_011716_070 Hb_002344_060--Hb_011716_070 Hb_000631_120 Hb_000631_120 Hb_062416_010--Hb_000631_120 Hb_062416_010--Hb_000059_020 Hb_002524_020 Hb_002524_020 Hb_062416_010--Hb_002524_020 Hb_062416_010--Hb_008948_140 Hb_007765_030 Hb_007765_030 Hb_062416_010--Hb_007765_030 Hb_001259_120 Hb_001259_120 Hb_062416_010--Hb_001259_120 Hb_002045_250 Hb_002045_250 Hb_002874_090--Hb_002045_250 Hb_092000_010 Hb_092000_010 Hb_002874_090--Hb_092000_010 Hb_004544_040 Hb_004544_040 Hb_002874_090--Hb_004544_040 Hb_007062_030 Hb_007062_030 Hb_002874_090--Hb_007062_030 Hb_001552_030 Hb_001552_030 Hb_002874_090--Hb_001552_030 Hb_000017_230 Hb_000017_230 Hb_002874_090--Hb_000017_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.73942 4.35841 1.82524 3.18535 0.874199 2.56577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.21912 1.7616 0.734896 4.10826 1.17972

CAGE analysis