Hb_162174_010

Information

Type -
Description -
Location Contig162174: 4818-5726
Sequence    

Annotation

kegg
ID rcu:RCOM_1212390
description Xylem serine proteinase 1 precursor, putative (EC:1.3.1.74)
nr
ID XP_002524587.1
description Xylem serine proteinase 1 precursor, putative [Ricinus communis]
swissprot
ID Q9ZSP5
description Subtilisin-like protease SBT5.3 OS=Arabidopsis thaliana GN=AIR3 PE=2 SV=1
trembl
ID B9SF18
description Xylem serine proteinase 1, putative OS=Ricinus communis GN=RCOM_1212390 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162174_010 0.0 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
2 Hb_017043_040 0.0908536371 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_012655_010 0.0949118401 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
4 Hb_004881_070 0.1032073776 - - ATP binding protein, putative [Ricinus communis]
5 Hb_005731_010 0.106479535 - - hypothetical protein VITISV_030941 [Vitis vinifera]
6 Hb_000621_030 0.109038397 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
7 Hb_005018_010 0.1090939835 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
8 Hb_000941_110 0.1157228104 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
9 Hb_004116_050 0.1191840059 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
10 Hb_004076_060 0.1208622551 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]
11 Hb_002391_030 0.1226513245 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
12 Hb_000109_140 0.1227797888 - - hypothetical protein CICLE_v100314482mg, partial [Citrus clementina]
13 Hb_001516_010 0.12436934 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
14 Hb_002001_030 0.1244245759 - - Plasma membrane ATPase 4 [Gossypium arboreum]
15 Hb_000189_180 0.13193066 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
16 Hb_010743_010 0.1324854342 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
17 Hb_039435_010 0.1344919214 - - hypothetical protein SORBIDRAFT_10g025530 [Sorghum bicolor]
18 Hb_002822_010 0.1353516953 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
19 Hb_001958_010 0.1369653703 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
20 Hb_000816_240 0.1371296297 - - PREDICTED: phosphoglucan phosphatase LSF2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_162174_010 Hb_162174_010 Hb_017043_040 Hb_017043_040 Hb_162174_010--Hb_017043_040 Hb_012655_010 Hb_012655_010 Hb_162174_010--Hb_012655_010 Hb_004881_070 Hb_004881_070 Hb_162174_010--Hb_004881_070 Hb_005731_010 Hb_005731_010 Hb_162174_010--Hb_005731_010 Hb_000621_030 Hb_000621_030 Hb_162174_010--Hb_000621_030 Hb_005018_010 Hb_005018_010 Hb_162174_010--Hb_005018_010 Hb_017043_040--Hb_012655_010 Hb_000109_140 Hb_000109_140 Hb_017043_040--Hb_000109_140 Hb_017043_040--Hb_005731_010 Hb_000941_110 Hb_000941_110 Hb_017043_040--Hb_000941_110 Hb_119443_010 Hb_119443_010 Hb_017043_040--Hb_119443_010 Hb_012655_010--Hb_005731_010 Hb_004076_060 Hb_004076_060 Hb_012655_010--Hb_004076_060 Hb_012655_010--Hb_000941_110 Hb_012655_010--Hb_000109_140 Hb_004204_060 Hb_004204_060 Hb_012655_010--Hb_004204_060 Hb_004881_070--Hb_000621_030 Hb_004374_160 Hb_004374_160 Hb_004881_070--Hb_004374_160 Hb_001541_130 Hb_001541_130 Hb_004881_070--Hb_001541_130 Hb_001516_010 Hb_001516_010 Hb_004881_070--Hb_001516_010 Hb_000816_240 Hb_000816_240 Hb_004881_070--Hb_000816_240 Hb_005731_010--Hb_004076_060 Hb_000189_180 Hb_000189_180 Hb_005731_010--Hb_000189_180 Hb_005731_010--Hb_000109_140 Hb_005731_010--Hb_000941_110 Hb_001958_010 Hb_001958_010 Hb_005731_010--Hb_001958_010 Hb_002001_030 Hb_002001_030 Hb_000621_030--Hb_002001_030 Hb_010264_010 Hb_010264_010 Hb_000621_030--Hb_010264_010 Hb_000621_030--Hb_004374_160 Hb_004116_050 Hb_004116_050 Hb_000621_030--Hb_004116_050 Hb_001491_070 Hb_001491_070 Hb_005018_010--Hb_001491_070 Hb_005018_010--Hb_002001_030 Hb_003163_010 Hb_003163_010 Hb_005018_010--Hb_003163_010 Hb_005018_010--Hb_001516_010 Hb_000424_130 Hb_000424_130 Hb_005018_010--Hb_000424_130 Hb_002835_310 Hb_002835_310 Hb_005018_010--Hb_002835_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0306434 2.89364 2.34985 0 0.037213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0548831 0 0.822676 2.85706

CAGE analysis