Hb_162304_010

Information

Type -
Description -
Location Contig162304: 2781-2975
Sequence    

Annotation

kegg
ID rcu:RCOM_1383280
description hypothetical protein
nr
ID XP_002522120.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S804
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1383280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162304_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005015_040 0.170962836 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana sylvestris]
3 Hb_009554_020 0.174893039 - - PREDICTED: em-like protein GEA6 [Sesamum indicum]
4 Hb_007970_030 0.2047084085 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
5 Hb_148146_030 0.2061230035 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
6 Hb_182291_020 0.206356438 - - hypothetical protein CICLE_v10029871mg [Citrus clementina]
7 Hb_000116_340 0.2082841217 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
8 Hb_000069_250 0.2111668576 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
9 Hb_000392_200 0.219595613 - - PREDICTED: cytochrome P450 98A2-like isoform X2 [Phoenix dactylifera]
10 Hb_136620_010 0.2207177115 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
11 Hb_003767_020 0.2227546362 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
12 Hb_003605_140 0.2284099285 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000160_340 0.228454289 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_000206_080 0.2312805167 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
15 Hb_023226_050 0.2359082562 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
16 Hb_002893_140 0.2389004713 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
17 Hb_010578_020 0.243986712 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_001049_080 0.2518346965 - - -
19 Hb_000172_500 0.2530427235 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000073_070 0.2568485677 - - -

Gene co-expression network

sample Hb_162304_010 Hb_162304_010 Hb_005015_040 Hb_005015_040 Hb_162304_010--Hb_005015_040 Hb_009554_020 Hb_009554_020 Hb_162304_010--Hb_009554_020 Hb_007970_030 Hb_007970_030 Hb_162304_010--Hb_007970_030 Hb_148146_030 Hb_148146_030 Hb_162304_010--Hb_148146_030 Hb_182291_020 Hb_182291_020 Hb_162304_010--Hb_182291_020 Hb_000116_340 Hb_000116_340 Hb_162304_010--Hb_000116_340 Hb_005015_040--Hb_009554_020 Hb_005015_040--Hb_148146_030 Hb_136620_010 Hb_136620_010 Hb_005015_040--Hb_136620_010 Hb_005015_040--Hb_007970_030 Hb_005015_040--Hb_182291_020 Hb_000206_080 Hb_000206_080 Hb_005015_040--Hb_000206_080 Hb_009554_020--Hb_007970_030 Hb_009554_020--Hb_182291_020 Hb_009554_020--Hb_000116_340 Hb_003767_020 Hb_003767_020 Hb_009554_020--Hb_003767_020 Hb_000160_340 Hb_000160_340 Hb_009554_020--Hb_000160_340 Hb_007970_030--Hb_182291_020 Hb_007970_030--Hb_000116_340 Hb_007970_030--Hb_003767_020 Hb_007970_030--Hb_000160_340 Hb_002893_140 Hb_002893_140 Hb_007970_030--Hb_002893_140 Hb_005348_130 Hb_005348_130 Hb_148146_030--Hb_005348_130 Hb_148146_030--Hb_009554_020 Hb_148146_030--Hb_136620_010 Hb_148146_030--Hb_007970_030 Hb_000069_250 Hb_000069_250 Hb_148146_030--Hb_000069_250 Hb_182291_020--Hb_000116_340 Hb_182291_020--Hb_003767_020 Hb_182291_020--Hb_000160_340 Hb_182291_020--Hb_002893_140 Hb_000116_340--Hb_003767_020 Hb_000116_340--Hb_000160_340 Hb_000116_340--Hb_002893_140 Hb_000073_070 Hb_000073_070 Hb_000116_340--Hb_000073_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94154 4.32007 44.9836 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis