Hb_162999_010

Information

Type -
Description -
Location Contig162999: 48-1043
Sequence    

Annotation

kegg
ID vvi:104877802
description uncharacterized LOC104877802
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162999_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_000048_090 0.1415023113 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
3 Hb_002153_010 0.1541436538 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
4 Hb_126398_010 0.1651268344 - - -
5 Hb_001488_110 0.1782110476 - - -
6 Hb_174107_010 0.1896036107 - - PREDICTED: uncharacterized protein LOC105775323 [Gossypium raimondii]
7 Hb_002188_100 0.1951464997 - - conserved hypothetical protein [Ricinus communis]
8 Hb_188382_010 0.1987656952 - - Ran GTPase binding protein, putative [Ricinus communis]
9 Hb_004025_030 0.2006590095 - - -
10 Hb_000329_530 0.2023899721 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
11 Hb_002205_200 0.2026376789 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
12 Hb_000048_100 0.2057186227 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004098_030 0.2096877068 - - TMV resistance protein N, putative [Ricinus communis]
14 Hb_004502_050 0.2246556845 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
15 Hb_000612_070 0.2295743167 - - conserved hypothetical protein [Ricinus communis]
16 Hb_077562_040 0.234621303 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
17 Hb_001095_060 0.2356034103 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
18 Hb_001741_050 0.237509845 - - -
19 Hb_135403_010 0.2390113467 - - HEV1.1 [Hevea brasiliensis]
20 Hb_015675_060 0.2500218467 - - -

Gene co-expression network

sample Hb_162999_010 Hb_162999_010 Hb_000048_090 Hb_000048_090 Hb_162999_010--Hb_000048_090 Hb_002153_010 Hb_002153_010 Hb_162999_010--Hb_002153_010 Hb_126398_010 Hb_126398_010 Hb_162999_010--Hb_126398_010 Hb_001488_110 Hb_001488_110 Hb_162999_010--Hb_001488_110 Hb_174107_010 Hb_174107_010 Hb_162999_010--Hb_174107_010 Hb_002188_100 Hb_002188_100 Hb_162999_010--Hb_002188_100 Hb_004025_030 Hb_004025_030 Hb_000048_090--Hb_004025_030 Hb_004502_050 Hb_004502_050 Hb_000048_090--Hb_004502_050 Hb_000048_100 Hb_000048_100 Hb_000048_090--Hb_000048_100 Hb_000048_090--Hb_126398_010 Hb_000048_090--Hb_002153_010 Hb_002153_010--Hb_174107_010 Hb_002153_010--Hb_001488_110 Hb_002153_010--Hb_002188_100 Hb_077562_040 Hb_077562_040 Hb_002153_010--Hb_077562_040 Hb_001981_080 Hb_001981_080 Hb_126398_010--Hb_001981_080 Hb_003702_050 Hb_003702_050 Hb_126398_010--Hb_003702_050 Hb_135403_010 Hb_135403_010 Hb_126398_010--Hb_135403_010 Hb_126398_010--Hb_002153_010 Hb_001488_110--Hb_077562_040 Hb_027445_060 Hb_027445_060 Hb_001488_110--Hb_027445_060 Hb_000184_120 Hb_000184_120 Hb_001488_110--Hb_000184_120 Hb_068946_010 Hb_068946_010 Hb_001488_110--Hb_068946_010 Hb_001488_110--Hb_004025_030 Hb_000563_530 Hb_000563_530 Hb_001488_110--Hb_000563_530 Hb_004116_110 Hb_004116_110 Hb_174107_010--Hb_004116_110 Hb_174107_010--Hb_001488_110 Hb_036285_010 Hb_036285_010 Hb_174107_010--Hb_036285_010 Hb_001095_060 Hb_001095_060 Hb_174107_010--Hb_001095_060 Hb_000463_050 Hb_000463_050 Hb_002188_100--Hb_000463_050 Hb_024505_030 Hb_024505_030 Hb_002188_100--Hb_024505_030 Hb_001922_040 Hb_001922_040 Hb_002188_100--Hb_001922_040 Hb_000329_530 Hb_000329_530 Hb_002188_100--Hb_000329_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0222353 0 0 0 0.0223069 0.0883726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0509299 0.040056 0 0 0

CAGE analysis