Hb_163145_020

Information

Type -
Description -
Location Contig163145: 19084-31295
Sequence    

Annotation

kegg
ID rcu:RCOM_0865180
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012074654.1
description PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
swissprot
ID O82302
description Protein phosphatase 2C 29 OS=Arabidopsis thaliana GN=PLL1 PE=1 SV=2
trembl
ID A0A067KI82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10616 PE=4 SV=1
Gene Ontology
ID GO:0004721
description protein phosphatase 2c 29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14859: 19416-31334 , PASA_asmbl_14860: 21851-22052
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163145_020 0.0 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
2 Hb_001329_300 0.0771991156 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
3 Hb_000567_260 0.0847988751 - - BnaA09g41440D [Brassica napus]
4 Hb_000635_220 0.0848884425 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
5 Hb_002006_090 0.0864831445 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
6 Hb_000457_150 0.0871568589 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
7 Hb_000614_230 0.0884858994 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
8 Hb_001863_390 0.0895311003 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
9 Hb_001123_230 0.0899589203 - - PREDICTED: uncharacterized protein LOC105647321 [Jatropha curcas]
10 Hb_011918_080 0.0903671531 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
11 Hb_000001_140 0.0915909981 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
12 Hb_003151_050 0.0922188328 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
13 Hb_006915_050 0.094533021 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
14 Hb_002518_140 0.0964131523 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
15 Hb_000059_220 0.0966703627 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
16 Hb_005147_090 0.0985366441 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
17 Hb_003687_100 0.0990002209 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
18 Hb_018790_060 0.0992986591 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
19 Hb_001277_330 0.0997169041 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
20 Hb_055062_030 0.0998327902 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_163145_020 Hb_163145_020 Hb_001329_300 Hb_001329_300 Hb_163145_020--Hb_001329_300 Hb_000567_260 Hb_000567_260 Hb_163145_020--Hb_000567_260 Hb_000635_220 Hb_000635_220 Hb_163145_020--Hb_000635_220 Hb_002006_090 Hb_002006_090 Hb_163145_020--Hb_002006_090 Hb_000457_150 Hb_000457_150 Hb_163145_020--Hb_000457_150 Hb_000614_230 Hb_000614_230 Hb_163145_020--Hb_000614_230 Hb_000110_160 Hb_000110_160 Hb_001329_300--Hb_000110_160 Hb_001329_300--Hb_000567_260 Hb_001329_300--Hb_002006_090 Hb_001329_300--Hb_000614_230 Hb_008066_010 Hb_008066_010 Hb_001329_300--Hb_008066_010 Hb_008695_210 Hb_008695_210 Hb_001329_300--Hb_008695_210 Hb_001671_020 Hb_001671_020 Hb_000567_260--Hb_001671_020 Hb_000567_260--Hb_000614_230 Hb_189003_080 Hb_189003_080 Hb_000567_260--Hb_189003_080 Hb_001248_130 Hb_001248_130 Hb_000567_260--Hb_001248_130 Hb_055062_030 Hb_055062_030 Hb_000567_260--Hb_055062_030 Hb_003687_100 Hb_003687_100 Hb_000635_220--Hb_003687_100 Hb_000343_130 Hb_000343_130 Hb_000635_220--Hb_000343_130 Hb_007747_200 Hb_007747_200 Hb_000635_220--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_000635_220--Hb_000317_280 Hb_006846_110 Hb_006846_110 Hb_000635_220--Hb_006846_110 Hb_002006_090--Hb_000614_230 Hb_002006_090--Hb_008695_210 Hb_000001_140 Hb_000001_140 Hb_002006_090--Hb_000001_140 Hb_001085_170 Hb_001085_170 Hb_002006_090--Hb_001085_170 Hb_006915_050 Hb_006915_050 Hb_002006_090--Hb_006915_050 Hb_005532_060 Hb_005532_060 Hb_000457_150--Hb_005532_060 Hb_178968_110 Hb_178968_110 Hb_000457_150--Hb_178968_110 Hb_000297_200 Hb_000297_200 Hb_000457_150--Hb_000297_200 Hb_000457_150--Hb_055062_030 Hb_000997_400 Hb_000997_400 Hb_000457_150--Hb_000997_400 Hb_000457_150--Hb_000567_260 Hb_000614_230--Hb_008695_210 Hb_003266_130 Hb_003266_130 Hb_000614_230--Hb_003266_130 Hb_000614_230--Hb_001085_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7259 17.6067 3.70643 8.64296 30.109 21.7679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.286 29.1802 50.1627 15.4267 10.3977

CAGE analysis