Hb_163413_010

Information

Type -
Description -
Location Contig163413: 2350-3277
Sequence    

Annotation

kegg
ID sot:102604542
description uncharacterized LOC102604542
nr
ID XP_006354980.1
description PREDICTED: uncharacterized protein LOC102604542 [Solanum tuberosum]
swissprot
ID -
description -
trembl
ID M1AZY8
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013052 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163413_010 0.0 - - PREDICTED: uncharacterized protein LOC102604542 [Solanum tuberosum]
2 Hb_007574_060 0.1809114424 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
3 Hb_036285_010 0.2854032899 - - -
4 Hb_021888_110 0.2858042239 - - -
5 Hb_000832_240 0.2880364693 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000367_170 0.291111485 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
7 Hb_001981_080 0.2913026158 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X4 [Musa acuminata subsp. malaccensis]
8 Hb_000048_100 0.2958721503 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003073_050 0.2995834273 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
10 Hb_004223_200 0.2998811166 - - PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]
11 Hb_056768_010 0.3002079892 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
12 Hb_126398_010 0.3081163283 - - -
13 Hb_174107_010 0.308476745 - - PREDICTED: uncharacterized protein LOC105775323 [Gossypium raimondii]
14 Hb_000227_030 0.3088872336 - - -
15 Hb_015401_010 0.3094621408 - - hypothetical protein VITISV_001548 [Vitis vinifera]
16 Hb_000348_040 0.3113237546 - - -
17 Hb_001488_110 0.3128434676 - - -
18 Hb_000347_510 0.3137340512 - - actin binding protein, putative [Ricinus communis]
19 Hb_001951_280 0.3142830094 - - -
20 Hb_039635_010 0.315348391 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]

Gene co-expression network

sample Hb_163413_010 Hb_163413_010 Hb_007574_060 Hb_007574_060 Hb_163413_010--Hb_007574_060 Hb_036285_010 Hb_036285_010 Hb_163413_010--Hb_036285_010 Hb_021888_110 Hb_021888_110 Hb_163413_010--Hb_021888_110 Hb_000832_240 Hb_000832_240 Hb_163413_010--Hb_000832_240 Hb_000367_170 Hb_000367_170 Hb_163413_010--Hb_000367_170 Hb_001981_080 Hb_001981_080 Hb_163413_010--Hb_001981_080 Hb_000048_100 Hb_000048_100 Hb_007574_060--Hb_000048_100 Hb_001405_130 Hb_001405_130 Hb_007574_060--Hb_001405_130 Hb_007574_060--Hb_000832_240 Hb_008442_010 Hb_008442_010 Hb_007574_060--Hb_008442_010 Hb_000348_040 Hb_000348_040 Hb_007574_060--Hb_000348_040 Hb_002205_200 Hb_002205_200 Hb_036285_010--Hb_002205_200 Hb_010588_010 Hb_010588_010 Hb_036285_010--Hb_010588_010 Hb_174107_010 Hb_174107_010 Hb_036285_010--Hb_174107_010 Hb_166548_010 Hb_166548_010 Hb_036285_010--Hb_166548_010 Hb_036285_010--Hb_001981_080 Hb_036285_010--Hb_021888_110 Hb_126112_010 Hb_126112_010 Hb_021888_110--Hb_126112_010 Hb_115919_010 Hb_115919_010 Hb_021888_110--Hb_115919_010 Hb_000025_100 Hb_000025_100 Hb_021888_110--Hb_000025_100 Hb_001095_060 Hb_001095_060 Hb_021888_110--Hb_001095_060 Hb_144101_010 Hb_144101_010 Hb_021888_110--Hb_144101_010 Hb_121236_010 Hb_121236_010 Hb_021888_110--Hb_121236_010 Hb_168737_010 Hb_168737_010 Hb_000832_240--Hb_168737_010 Hb_000122_030 Hb_000122_030 Hb_000832_240--Hb_000122_030 Hb_121550_010 Hb_121550_010 Hb_000832_240--Hb_121550_010 Hb_001057_050 Hb_001057_050 Hb_000832_240--Hb_001057_050 Hb_000001_040 Hb_000001_040 Hb_000832_240--Hb_000001_040 Hb_005305_060 Hb_005305_060 Hb_000832_240--Hb_005305_060 Hb_015978_070 Hb_015978_070 Hb_000367_170--Hb_015978_070 Hb_001575_030 Hb_001575_030 Hb_000367_170--Hb_001575_030 Hb_001610_130 Hb_001610_130 Hb_000367_170--Hb_001610_130 Hb_011310_060 Hb_011310_060 Hb_000367_170--Hb_011310_060 Hb_001053_160 Hb_001053_160 Hb_000367_170--Hb_001053_160 Hb_000009_040 Hb_000009_040 Hb_000367_170--Hb_000009_040 Hb_126398_010 Hb_126398_010 Hb_001981_080--Hb_126398_010 Hb_145827_010 Hb_145827_010 Hb_001981_080--Hb_145827_010 Hb_001544_020 Hb_001544_020 Hb_001981_080--Hb_001544_020 Hb_003702_050 Hb_003702_050 Hb_001981_080--Hb_003702_050 Hb_000003_690 Hb_000003_690 Hb_001981_080--Hb_000003_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.194695 0.0741273 0.0715067 0 0.0796748 1.3114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.200239 1.25826 0 0 0

CAGE analysis